CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0547500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 77.0 Os09g0547500 AK062595.1 - Lysine decarboxylase-like protein 5e-1 At2g35990 - S.X. H.G.
0.67 87.2 Os03g0225900 AY310358.1 - Allene oxide synthase (EC 4.2.1.92) 2e+1 At5g26140 lysine decarboxylase family protein S.X. H.G.
0.50 68.0 Os09g0380600 AK063655.1 - Conserved hypothetical protein 1e+1 At5g67070 RALFL34 (ralf-like 34) S.X. H.G.
0.40 51.1 Os01g0656400 9629.m04484 - WRKY transcription factor 15 8e-3 At3g11820 SYP121 (SYNTAXIN OF PLANTS 121) S.X. H.G.
0.33 38.8 Os05g0546400 AK109087.1 - Conserved hypothetical protein 1e-1 At1g17880 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative S.X. H.G.
0.07 3.7 Os03g0315400 BI807304 - MYB-related protein 340 4e+0 At5g27247 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
33.6 99.8 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
30.7 99.7 GSM375765 gid1-3_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
25.6 99.5 GSM375648 Taichung 65_shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
25.5 99.5 GSM375647 Taichung 65_shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
24.0 99.4 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
24.0 99.4 GSM278855 KT95-418-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
22.4 99.3 GSM375649 Taichung 65_shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
10.9 98.1 GSM375775 slr1 (k1001)_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
10.5 98.1 GSM278846 WuYun3-RSV infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
10.4 98.1 GSM375777 slr1 (k1001)_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 2e-45 184 Os03g0857900 AK071705.1 - Lysine decarboxylase-like protein 2e+0 At2g46505 SDH4 C.G. S.X.
0.16 2e-8 61 Os10g0479500 AK108805.1 - Conserved hypothetical protein 730 family protein 2e-7 At2g37210 - C.G. S.X.
0.13 1e-3 46 Os04g0518800 AK069293.1 - - 8e-31 At2g37210 - C.G. S.X.
0.08 7e-8 59 Os01g0588900 NM_192559.1 - Conserved hypothetical protein 730 family protein 3e-1 At2g35990 - C.G. S.X.
0.07 1e-9 65 Os05g0591600 9633.m04847 - Lysine decarboxylase-like protein 1e-13 At2g37210 - C.G. S.X.
0.06 2e-5 52 Os03g0109300 AK099538.1 - Conserved hypothetical protein 730 family protein 1e-17 At2g28305 unknown protein C.G. S.X.
0.06 1e-3 46 Os03g0697200 9631.m04780 - Lysine decarboxylase-like protein 2e-2 At3g53450 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e-1 36 Arabidopsis thaliana At2g35990 818172 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFMA - - - C.G. S.X.
0.02 2e-1 38 Glycine max PsAffx.psZO006iH05r_at PsAffx.psZO006iH05r - - 1e+0 At5g05830 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.22 2e-11 69 Hordeum vulgare Contig13074_at Contig13074 - - 1e-7 At2g37210 - C.G. S.X.
0.05 1e-2 42 Populus trichocarpa PtpAffx.219566.1.S1_at pmrna35519 hypothetical protein - 4e+0 At5g26140 lysine decarboxylase family protein C.G. S.X.
0.15 7e-16 85 Triticum aestivum Ta.15731.1.S1_at CA486583 - - 1e+0 At4g11870 unknown protein C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1615789_at BQ795769 - - 1e-3 At1g26250 proline-rich extensin, putative C.G. S.X.
0.03 1e-2 40 Zea mays Zm.17721.1.A1_at CK370164 lysine decarboxylase-like protein - 3e-2 At5g11950 protein homodimerization C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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