Gene omics information

Query gene ID Os09g0541900
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7189.6Os09g0541900AB031299.1-Proteasome component region PCI domain containingprotein1e-24At1g20200EMB2719 (EMBRYO DEFECTIVE 2719)S.X.H.G.
0.7391.1Os05g0301500AK067027.1-Ribophorin I (Fragment)7e-5At1g76400ribophorin I family proteinS.X.H.G.
0.6787.2Os07g0209000AK058399.1-Dolichyl-di-phosphooligosaccharide-proteinglycotransferase (Oligosaccharyltransferase)-like1e-24At5g66680DGL1S.X.H.G.
0.6787.2Os05g0147400AK062146.1-T-complex protein 1, zeta subunit (TCP-1-zeta)(CCT-zeta) (CCT-zeta- 1)6e-67At5g16070chaperonin, putativeS.X.H.G.
0.4458.1Os06g0538000AK069949.1-Chaperonin Cpn60/TCP-1 family protein5e-83At5g26360chaperonin, putativeS.X.H.G.
0.3236.3Os01g0911200AK101333.1-Ribophorin II family protein1e-6At4g21150HAP6 (HAPLESS 6)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
4.896.5GSM67054FL478 control replicate 3GSE3053Rice salt expression
4.696.3GSM67056FL478 salt stressed replicate 2GSE3053Rice salt expression
4.496.2GSM67052FL478 control replicate 1GSE3053Rice salt expression
4.396.1GSM275410Bala root tip_At the wax layer_rep3GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.095.9GSM4094319311_young panicle 2cm, biological rep2GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.995.8GSM4094329311_young panicle 2cm, biological rep3GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.995.8GSM4094339311_young panicle 2cm, biological rep4GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.895.7GSM99862TCHW P5_m103 salt stress, biological rep2GSE4438Expression data from rice under salinity stress
3.795.6GSM67057FL478 salt stressed replicate 3GSE3053Rice salt expression
3.795.6GSM275409Bala root tip_At the wax layer_rep2GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.600835Os08g0550100AK058374.1-Proteasome component region PCI domain containingprotein3e-28At1g20200EMB2719 (EMBRYO DEFECTIVE 2719)C.G.S.X.
0.012e-346Os08g0364900AK105533.1-Pirin-like protein1e-12At2g4020560S ribosomal protein L41 (RPL41C)C.G.S.X.
0.018e-344Os02g0265400AK060027.1-Vacuolar protein sorting 29 (Vesicle proteinsorting 29) (hVPS29) (MDS007) (PEP11) (DC7/DC15). Spliceisoform 22e-25At3g47810MAG1 (MAIGO 1)C.G.S.X.
0.013e-242Os06g06048009634.m03858--3e+0At4g33660unknown proteinC.G.S.X.
0.013e-242Os07g0435900AK067172.1-SRA-YDG domain containing protein4e-1At5g19090heavy-metal-associated domain-containing proteinC.G.S.X.
0.011e-140Os01g02727009629.m01655--1e+0At5g27440unknown proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.301e-24115Arabidopsis thalianaAt1g20200838609EMB2719 (EMBRYO DEFECTIVE 2719)F:enzyme regulator activity;P:embryonic development ending in seed dormancy, ubiquitin-dependent protein catabolic process;C:plasma membrane, proteasome regulatory particle, lid subcomplex;MFPO---C.G.S.X.
0.241e-22109Glycine maxGma.5090.1.S1_atAW101893--4e-7At1g20200EMB2719 (EMBRYO DEFECTIVE 2719)C.G.S.X.
0.6501191Hordeum vulgareContig8943_atContig8943--1e-6At1g7599026S proteasome regulatory subunit S3, putative (RPN3)C.G.S.X.
0.324e-41171Populus trichocarpaPtpAffx.163275.1.A1_atCV239659hypothetical protein-1e-21At1g20200EMB2719 (EMBRYO DEFECTIVE 2719)C.G.S.X.
0.540680Triticum aestivumTa.23012.1.S1_atAJ610851--7e-20At1g20200EMB2719 (EMBRYO DEFECTIVE 2719)C.G.S.X.
0.397e-39161Vitis vinifera1613705_atCF517167hypothetical protein LOC100264130-4e-27At1g20200EMB2719 (EMBRYO DEFECTIVE 2719)C.G.S.X.
0.540688Zea maysZm.701.1.A1_a_atCA40393426S proteasome non-ATPase regulatory subunit 3 /// 26S proteasome non-ATPase regulatory subunit 3-2e-8At1g7599026S proteasome regulatory subunit S3, putative (RPN3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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