CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0535500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os09g0535500 AK108282.1 - Zn-finger, RING domain containing protein 7e+0 At4g35480 RHA3B S.X. H.G.
0.60 79.7 Os11g0546500 9639.m03098 - Galactosyl transferase family protein 5e-2 At4g37690 galactosyl transferase GMA12/MNN10 family protein S.X. H.G.
0.50 68.0 Os02g0631100 AK105126.1 - Conserved hypothetical protein 2e+0 At4g03320 tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV) S.X. H.G.
0.44 58.1 Os03g0748500 AK110695.1 - Flavodoxin/nitric oxide synthase domain containingprotein 2e-3 At5g54500 FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1) S.X. H.G.
0.31 34.5 Os03g0283900 AK105569.1 - - 6e-2 At1g07870 protein kinase family protein S.X. H.G.
0.18 13.7 Os06g0656700 AK110668.1 - Hypothetical protein 6e+0 At5g19860 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
56.1 99.9 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
54.9 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
46.6 99.9 GSM302917 endo6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
35.3 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
28.7 99.6 GSM159272 Rice coleoptiles, 4 days old, anoxic, REPLICATE 2 (Sample #12) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
14.3 98.6 GSM302915 emb6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
12.8 98.4 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
10.4 98.1 GSM302914 emb6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
9.4 97.9 GSM159271 Rice coleoptiles, 4 days old, anoxic, REPLICATE 1 (Sample #11) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
7.4 97.5 GSM195224 Suspension cell GSE7951 Genome-wide gene expression profiling of rice stigma
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 9e-7 56 Os10g0438800 AK063228.1 - Zn-finger, RING domain containing protein 8e-2 At1g64640 plastocyanin-like domain-containing protein C.G. S.X.
0.05 1e-2 42 Os02g0249300 9630.m01412 - Zn-finger, RING domain containing protein 1e+0 At2g01610 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.04 6e-5 50 Os04g0243700 AK059146.1 - Zn-finger, RING domain containing protein 8e-2 At2g25409 unknown protein C.G. S.X.
0.04 9e-4 46 Os01g0213200 NM_188423.1 - - 4e-1 At1g47970 unknown protein C.G. S.X.
0.04 4e-3 44 Os05g0478000 AK111029.1 - Zn-finger, RING domain containing protein 3e-2 At5g01880 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 2e-5 52 Os06g0534800 AK120650.1 - Ankyrin repeat containing protein 3e+0 At5g23100 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e+0 32 Arabidopsis thaliana At4g35480 829700 RHA3B Encodes a putative RING-H2 finger protein RHA3b. - - - C.G. S.X.
0.05 4e-2 40 Glycine max Gma.16021.1.S1_at BQ296209 - - 9e-12 At1g20823 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.06 5e-2 38 Hordeum vulgare Contig20563_at Contig20563 - - 4e-1 At2g28500 LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11) C.G. S.X.
0.02 2e+0 34 Populus trichocarpa PtpAffx.218831.1.S1_at pmrna34570 hypothetical protein - 5e+0 At2g26520 unknown protein C.G. S.X.
0.18 3e-33 143 Triticum aestivum TaAffx.5498.1.S1_at CA708881 - - 2e-1 At2g20613 unknown protein C.G. S.X.
0.03 3e-2 38 Vitis vinifera 1609989_at CF415187 - - 2e+1 At4g08190 Ras-related GTP-binding protein, putative C.G. S.X.
0.04 2e-4 46 Zea mays Zm.2277.1.S1_at CF015271 zinc finger, C3HC4 type family protein - 6e+0 At5g20650 COPT5 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0016567 The process by which one or more ubiquitin moieties are added to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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