CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0528800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os09g0528800 AK070219.1 - RabGAP/TBC domain containing protein 2e-11 At5g41940 RabGAP/TBC domain-containing protein S.X. H.G.
0.22 19.4 Os03g0246800 AK070145.1 - Guanine nucleotide exchange factor-like protein 1e-39 At3g60860 guanine nucleotide exchange family protein S.X. H.G.
0.14 9.3 Os02g0557200 AK070026.1 - Auxin response factor 1 1e-22 At1g59750 ARF1 (AUXIN RESPONSE FACTOR 1) S.X. H.G.
0.07 3.7 Os07g0690400 AK068590.1 - Protein phosphatase 2C-like 3e-28 At1g68410 protein phosphatase 2C-related / PP2C-related S.X. H.G.
0.05 2.5 Os04g0683600 AK065557.1 - Receptor kinase-like protein 3e-7 At1g63430 leucine-rich repeat transmembrane protein kinase, putative S.X. H.G.
0.02 1.0 Os02g0208900 AK070031.1 - ZIGA2 protein (Fragment) 6e-3 At4g32630 ARF GTPase activator/ zinc ion binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.0 98.6 GSM409433 9311_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
14.2 98.5 GSM67062 IR29 salt stressed replicate 3 GSE3053 Rice salt expression
13.5 98.5 GSM67060 IR29 salt stressed replicate 1 GSE3053 Rice salt expression
11.4 98.2 GSM67059 IR29 control replicate 2 GSE3053 Rice salt expression
11.3 98.2 GSM429983 Rice mutant phoenix (pho) panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
10.8 98.1 GSM67061 IR29 salt stressed replicate 2 GSE3053 Rice salt expression
10.7 98.1 GSM99864 TCHW P7_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
10.5 98.1 GSM429982 Rice wild-type panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
9.6 97.9 GSM409432 9311_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
9.5 97.9 GSM429984 Rice wild-type panicle rep2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.46 4e-116 420 Os08g0547200 AK101130.1 - RabGAP/TBC domain containing protein 1e-21 At3g49350 RAB GTPase activator C.G. S.X.
0.12 3e-24 115 Os10g0518100 AK068787.1 - RabGAP/TBC domain containing protein 1e-6 At5g41940 RabGAP/TBC domain-containing protein C.G. S.X.
0.02 2e+0 36 Os05g0544000 9633.m04384 - - 2e+0 At2g05260 lipase class 3 family protein C.G. S.X.
0.01 2e-3 46 Os02g0810500 AY220667.1 - RabGAP/TBC domain containing protein 2e-1 At3g19520 unknown protein C.G. S.X.
0.01 8e-3 44 Os04g0616700 AK112032.1 - BRASSINOSTEROID INSENSITIVE 1-associated receptorkinase 1 precursor (EC 2.7.1.37) (BRI1-associatedreceptor kinase 1) (Somatic embryogenesis receptor-likekinase 3) 2e-3 At1g56140 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.01 5e-1 38 Os05g0485800 AK108702.1 - Pollen-specific protein NTP303 precursor 6e-1 At3g13390 sks11 (SKU5 Similar 11) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 2e-11 71 Arabidopsis thaliana At5g41940 834199 RabGAP/TBC domain-containing protein F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFPBVA - - - C.G. S.X.
0.13 7e-12 73 Glycine max Gma.5192.1.S1_at CD410634 - - 1e-14 At3g49350 RAB GTPase activator C.G. S.X.
0.37 4e-122 438 Hordeum vulgare Contig16448_at Contig16448 - - 2e-7 At5g41940 RabGAP/TBC domain-containing protein C.G. S.X.
0.10 4e-10 67 Populus trichocarpa PtpAffx.61165.2.A1_at CV265039 hypothetical protein - 4e-12 At5g41940 RabGAP/TBC domain-containing protein C.G. S.X.
0.56 4e-173 609 Triticum aestivum Ta.18862.1.S1_at CA637477 - - 2e-8 At5g53570 RabGAP/TBC domain-containing protein C.G. S.X.
0.14 6e-18 91 Vitis vinifera 1622461_at CF207190 hypothetical protein LOC100265048 - 3e-28 At5g53570 RabGAP/TBC domain-containing protein C.G. S.X.
0.24 3e-113 408 Zea mays Zm.16008.1.S1_at CF972563 - - 1e-5 At3g49350 RAB GTPase activator C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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