CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0520500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 77.0 Os09g0520500 AK107978.1 - Hypothetical protein 2e-2 At5g41600 BTI3 (VIRB2-INTERACTING PROTEIN 3) S.X. H.G.
0.54 71.9 Os03g0320800 AK103265.1 - Protein kinase domain containing protein 3e-2 At4g34670 40S ribosomal protein S3A (RPS3aB) S.X. H.G.
0.48 63.7 Os06g0478600 AK064086.1 - Leucine-rich repeat, plant specific containingprotein 9e-1 At5g01380 transcription factor S.X. H.G.
0.48 63.7 Os03g0239000 AK061284.1 - Glycoside hydrolase, family 16 domain containingprotein 2e-4 At1g32170 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) S.X. H.G.
0.48 63.7 Os06g0217900 AK103765.1 - Cyclin, C-terminal domain containing protein 8e-1 At4g14520 DNA-directed RNA polymerase II-related S.X. H.G.
0.46 60.9 Os01g0914400 AK063138.1 - Conserved hypothetical protein 6e-3 At4g12970 unknown protein S.X. H.G.
0.37 45.0 Os02g0756100 AK060615.1 - Conserved hypothetical protein 2e+0 At3g12140 emsy N terminus domain-containing protein / ENT domain-containing protein S.X. H.G.
0.33 38.8 Os04g0525700 AK105830.1 - Peptidase S10, serine carboxypeptidase familyprotein 2e-1 At5g23210 SCPL34 S.X. H.G.
0.32 36.3 Os01g0957100 AK122121.1 - Protein kinase domain containing protein 2e+0 At3g45230 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.31 34.5 Os04g0649200 AK103112.1 - Plant protein of unknown function DUF869 familyprotein 4e-4 At2g23360 transport protein-related S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.7 98.8 GSM99879 TCHW P21_ir29 control, biological rep3 GSE4438 Expression data from rice under salinity stress
14.3 98.6 GSM99881 TCHW P23_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
14.1 98.5 GSM99882 TCHW P24_ir29 salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
12.9 98.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.7 98.4 GSM67057 FL478 salt stressed replicate 3 GSE3053 Rice salt expression
11.6 98.2 GSM99880 TCHW P22_ir29 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
11.5 98.2 GSM429983 Rice mutant phoenix (pho) panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
11.3 98.2 GSM99878 TCHW P20_ir29 control, biological rep2 GSE4438 Expression data from rice under salinity stress
10.7 98.1 GSM67055 FL478 salt stressed replicate 1 GSE3053 Rice salt expression
9.2 97.9 GSM99871 TCHW P14_agami control, biological rep2 GSE4438 Expression data from rice under salinity stress
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 5e-5 50 Os11g0152000 9639.m00458 - - 7e-1 At1g15220 CCMH C.G. S.X.
0.05 3e-3 44 Os11g0603801 9639.m03556 - - 9e-1 At5g63480 unknown protein C.G. S.X.
0.03 5e-5 50 Os09g0494600 AK107667.1 - Protein of unknown function DUF599 family protein 1e-2 At5g24790 unknown protein C.G. S.X.
0.03 3e-3 44 Os01g0112000 9629.m00127 - Conserved hypothetical protein 2e+0 At4g11870 unknown protein C.G. S.X.
0.01 3e-3 44 Os05g0539400 AK068572.1 - Glycoside hydrolase, family 35 protein 1e-10 At1g72990 BGAL17 (beta-galactosidase 17) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-2 40 Arabidopsis thaliana At5g41600 834162 BTI3 (VIRB2-INTERACTING PROTEIN 3) F:unknown;P:biological_process unknown;C:endoplasmic reticulum, plasma membrane;MPOF - - - C.G. S.X.
0.03 1e-1 38 Glycine max GmaAffx.2206.1.S1_at BM188020 - - 4e+0 At5g22870 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related C.G. S.X.
0.03 7e-1 34 Hordeum vulgare HVSMEl0002L04r2_s_at HVSMEl0002L04r2 - - 2e+1 At5g23027 unknown protein C.G. S.X.
0.03 5e-1 36 Populus trichocarpa PtpAffx.214517.1.S1_at pmrna28228 hypothetical protein - 6e-1 At5g39860 PRE1 (PACLOBUTRAZOL RESISTANCE1) C.G. S.X.
0.16 3e-20 99 Triticum aestivum TaAffx.30435.1.S1_at CA625345 - - 9e-1 At5g47700 60S acidic ribosomal protein P1 (RPP1C) C.G. S.X.
0.03 7e-3 40 Vitis vinifera 1610411_at CD797664 - - 9e-1 At5g17710 EMB1241 (embryo defective 1241) C.G. S.X.
0.14 6e-35 147 Zea mays Zm.3103.1.A1_a_at CF623353 hypothetical protein LOC100194107 - 1e+0 At4g16380 metal ion binding C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage