CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0520200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.8 Os09g0520200 9637.m02967 - Alpha/beta hydrolase family protein 2e-37 At4g24160 hydrolase, alpha/beta fold family protein S.X. H.G.
0.31 34.5 Os02g0601100 AK120475.1 - Nucleotide-binding protein 3e-46 At5g50960 NBP35 (NUCLEOTIDE BINDING PROTEIN 35) S.X. H.G.
0.27 27.5 Os02g0750600 AK066145.1 - Ubiquitin domain containing protein 6e-7 At1g22050 MUB6 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 6 PRECURSOR) S.X. H.G.
0.15 10.3 Os04g0556300 AY100689.1 - Glutathione peroxidase-like protein GPX54Hv 3e-33 At4g11600 ATGPX6 (GLUTATHIONE PEROXIDASE 6) S.X. H.G.
0.09 4.9 Os06g0714200 BM419528 - Calcium/calmodulin-dependent protein kinasehomolog|CaM kinase homolog|MCK1 protein 8e-19 At2g46700 calcium-dependent protein kinase, putative / CDPK, putative S.X. H.G.
0.04 2.0 Os05g0154600 AK104006.1 - The start codon is not identified. 1e-2 At3g05545 transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.0 98.3 GSM100446 Rice Bala 1ppm Arsenate Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
4.3 96.1 GSM421726 MOCK, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.2 96.0 GSM421686 XOC, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.2 96.0 GSM431928 Root- -Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
4.1 96.0 GSM431927 Root- -Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
4.0 95.9 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
4.0 95.9 GSM100445 Rice Bala 1ppm Arsenate Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
3.9 95.8 GSM154953 Leaf_DMSO-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
3.5 95.3 GSM116400 Seedling_IAA treated_rep2 GSE5167 Rice seedling hormone treatment
3.5 95.3 GSM359921 Pokkali root, control, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-3 44 Os05g0393200 9633.m02996 - Conserved hypothetical protein 4e-1 At3g06180 structural constituent of ribosome C.G. S.X.
0.02 8e-5 50 Os09g0295000 AK106741.1 - No apical meristem (NAM) protein domain containingprotein 2e-1 At5g18065 unknown protein C.G. S.X.
0.02 1e-3 46 Os02g0555900 BI812751 - Protein kinase domain containing protein 1e+0 At1g59680 EDA1 (embryo sac development arrest 1) C.G. S.X.
0.01 3e-4 48 Os02g0109800 AK069014.1 - TPR-like domain containing protein 3e-4 At4g10840 kinesin light chain-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 2e-37 157 Arabidopsis thaliana At4g24160 828516 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOMFPA - - - C.G. S.X.
0.31 3e-34 147 Glycine max GmaAffx.63301.1.S1_at BF066728 - - 2e-49 At4g24160 hydrolase, alpha/beta fold family protein C.G. S.X.
0.48 3e-177 621 Hordeum vulgare Contig12512_at Contig12512 - - 4e-20 At4g24160 hydrolase, alpha/beta fold family protein C.G. S.X.
0.22 4e-55 216 Populus trichocarpa PtpAffx.80839.1.S1_at CV267772 hypothetical protein - 7e-60 At4g24160 hydrolase, alpha/beta fold family protein C.G. S.X.
0.43 5e-128 458 Triticum aestivum Ta.26236.1.A1_at CD453043 - - 6e-10 At4g24160 hydrolase, alpha/beta fold family protein C.G. S.X.
0.15 8e-13 73 Vitis vinifera 1615803_s_at CB983064 hypothetical protein LOC100267776 - 1e-16 At4g24160 hydrolase, alpha/beta fold family protein C.G. S.X.
0.58 0 847 Zea mays Zm.10271.1.S1_at CA452443 abhydrolase domain-containing protein 5 - 9e-35 At4g24160 hydrolase, alpha/beta fold family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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