CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0517700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.8 Os09g0517700 AK071305.1 - Thioesterase superfamily domain containing protein 1e-9 At5g48370 thioesterase family protein S.X. H.G.
0.36 44.0 Os02g0274700 AK105691.1 - Conserved hypothetical protein 1e+0 At3g02080 40S ribosomal protein S19 (RPS19A) S.X. H.G.
0.26 25.6 Os08g0128300 AK103383.1 - - 1e-9 At1g13180 DIS1 (DISTORTED TRICHOMES 1) S.X. H.G.
0.18 13.7 Os05g0443300 CB621506 - Sec23/Sec24 trunk region domain containing protein 4e-13 At2g27460 sec23/sec24 transport family protein S.X. H.G.
0.09 4.9 Os02g0184000 AK072584.1 - Zn-finger, DHHC type domain containing protein 1e-46 At5g20350 TIP1 (TIP GROWTH DEFECTIVE 1) S.X. H.G.
0.04 2.0 Os07g0476500 AK066346.1 - Peptidyl-prolyl cis-trans isomerase, cyclophilintype domain containing protein 1e-5 At3g66654 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.7 97.3 GSM154954 Leaf_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
6.7 97.3 GSM154955 Leaf_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
6.4 97.2 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
6.1 97.1 GSM357122 14-day-old seedling, rep 1 GSE14275 Expression data for heat shock in rice seedlings
5.8 97.0 GSM278855 KT95-418-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
5.8 97.0 GSM154956 Leaf_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
5.6 96.9 GSM154948 Leaf_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
5.4 96.8 GSM357134 14-day-old seedling, rep 3 GSE14275 Expression data for heat shock in rice seedlings
5.3 96.7 GSM154949 Leaf_tZ-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
5.0 96.6 GSM154945 Leaf_DMSO-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-3 46 Os01g0321700 AK070488.1 - Sec23/Sec24 zinc finger domain containing protein 2e-3 At4g01810 protein transport protein-related C.G. S.X.
0.02 2e-3 46 Os11g0685600 CB659419 - WRKY transcription factor 41 2e+0 At3g53630 unknown protein C.G. S.X.
0.01 7e-3 44 Os08g0490000 AK100183.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 3e-1 At1g69010 BIM2 (BES1-interacting Myc-like protein 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 1e-9 65 Arabidopsis thaliana At5g48370 834890 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:unknown;C:peroxisome;BMOFPA - - - C.G. S.X.
0.16 4e-16 87 Glycine max Gma.7620.2.S1_at CA936384 - - 3e-32 At5g48370 thioesterase family protein C.G. S.X.
0.60 0 979 Hordeum vulgare Contig9679_at Contig9679 - - 2e-1 At5g48370 thioesterase family protein C.G. S.X.
0.13 2e-11 71 Populus trichocarpa PtpAffx.39457.1.A1_a_at CK096675 hypothetical protein - 6e-22 At5g48370 thioesterase family protein C.G. S.X.
0.50 3e-158 559 Triticum aestivum Ta.24575.1.S1_s_at CD933875 - - 2e-1 At5g48370 thioesterase family protein C.G. S.X.
0.12 1e-18 93 Vitis vinifera 1621582_at CB007952 hypothetical protein LOC100256349 - 1e-35 At5g48370 thioesterase family protein C.G. S.X.
0.32 3e-131 468 Zea mays Zm.7559.1.A1_at AY110410.1 - - 6e-3 At5g48370 thioesterase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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