CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0517200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.98 100.0 Os09g0517200 9637.m02946 - Disease resistance protein family protein 4e-1 At5g23100 unknown protein S.X. H.G.
0.55 73.7 Os08g0396700 AK065899.1 - DC1 domain containing protein 1e-1 At3g55040 GSTL2 S.X. H.G.
0.45 58.8 Os01g0815900 9629.m05891 - TPR-like domain containing protein 3e-2 At2g02750 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.41 52.4 Os04g0203500 9632.m01168 - Cysteine proteinase 1e-4 At2g34080 cysteine proteinase, putative S.X. H.G.
0.41 52.4 Os08g0334300 CB659676 - Retrotransposon gag protein family protein 2e-2 At1g24030 protein kinase family protein S.X. H.G.
0.40 51.1 Os07g0668400 NM_186102.1 - - 8e-1 At4g27310 zinc finger (B-box type) family protein S.X. H.G.
0.39 48.3 Os09g0479500 AK121624.1 - Disease resistance protein family protein 5e-1 At1g03890 cupin family protein S.X. H.G.
0.38 46.9 Os03g0842100 9631.m06176 - - 3e+0 At5g03710 unknown protein S.X. H.G.
0.38 46.9 Os07g0108100 NM_186150.1 - Conserved hypothetical protein 1e+0 At5g56840 DNA-binding family protein S.X. H.G.
0.36 44.0 Os03g0600600 9631.m03880 - Beta-1,3-glucanase precursor 5e+0 At5g20330 BETAG4 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
40.0 99.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.3 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
26.6 99.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.5 99.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.2 99.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.8 99.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.8 99.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.4 99.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.0 99.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.9 99.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 5e-39 165 Os09g0517100 AK100778.1 - Disease resistance protein family protein 5e-1 At1g75550 glycine-rich protein C.G. S.X.
0.04 8e-10 67 Os12g0559500 9640.m03617 - Resistance protein T10rga2-1A 5e-2 At4g11040 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.02 3e-9 65 Os08g0539900 9636.m04345 - - 1e-1 At4g16930 disease resistance protein (TIR-NBS-LRR class), putative C.G. S.X.
0.02 1e-8 63 Os07g0197500 9635.m00956 - - 9e-1 At1g77420 hydrolase, alpha/beta fold family protein C.G. S.X.
0.02 1e-8 63 Os10g0568500 9638.m03828 - - 8e+0 At5g47610 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 8e-7 57 Os11g0551700 9639.m03145 - Disease resistance protein family protein 2e-2 At5g07910 leucine-rich repeat family protein C.G. S.X.
0.02 3e-6 56 Os07g0197200 9635.m00955 - - 2e+0 At4g28290 unknown protein C.G. S.X.
0.01 3e-6 56 Os11g0605900 CB664533 - Hypothetical protein 2e+0 At3g47710 bHLH family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e-1 38 Arabidopsis thaliana At5g23100 832374 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.01 8e-3 44 Glycine max PsAffx.CL87Contig2_s_at PsAffx.CL87Contig2 - - 1e+0 At1g60010 unknown protein C.G. S.X.
0.02 7e-4 46 Hordeum vulgare HVSMEn0012H13r2_at HVSMEn0012H13r2 - - 5e-2 At5g63280 zinc finger (C2H2 type) family protein C.G. S.X.
0.01 1e-1 40 Populus trichocarpa PtpAffx.66619.1.S1_at CV258048 hypothetical protein - 3e-2 At1g50440 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.07 3e-11 71 Triticum aestivum TaAffx.25455.1.S1_at CA699690 - - 6e-2 At5g07600 oleosin / glycine-rich protein C.G. S.X.
0.01 4e-1 36 Vitis vinifera 1619751_at CB341549 hypothetical protein LOC100264878 - 5e-15 At4g14560 IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE) C.G. S.X.
0.01 6e-1 36 Zea mays Zm.3644.1.S1_at CO525387 hypothetical protein AY111178 /// hypothetical protein LOC100191318 /// hypothetical protein LOC100217011 - 8e-1 At5g66390 peroxidase 72 (PER72) (P72) (PRXR8) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006915 A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.
L GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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