CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0514400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os09g0514400 AK060892.1 - Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit (EC2.5.1.58) (EC 2.5.1.59) (CAAX farnesyltransferase alphasubunit) (Ras proteins prenyltransferase alpha)(FTase-alpha) (Type I protein geranyl-geranyltransferasealpha subunit) (GGTase-I-alpha) 7e-4 At3g59380 FTA (FARNESYLTRANSFERASE A) S.X. H.G.
0.60 79.7 Os01g0681600 AK067869.1 - - 2e-1 At1g71430 unknown protein S.X. H.G.
0.25 24.1 Os02g0609400 AK061315.1 - Conserved hypothetical protein 2e+0 At4g16240 unknown protein S.X. H.G.
0.22 19.4 Os02g0324300 AK068494.1 - Protein of unknown function DUF572 family protein 1e-14 At1g25682 cell cycle control protein-related S.X. H.G.
0.09 4.9 Os03g0268000 AK063856.1 - Protein phosphatase 1, catalytic gsmms subunit 9e-38 At5g59160 TOPP2 S.X. H.G.
0.03 1.4 Os07g0508200 AK069914.1 - Hypothetical protein 2e-1 At1g54215 proline-rich family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.4 97.7 GSM149411 Rice Bala 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
7.2 97.4 GSM431930 Root- +Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
7.2 97.4 GSM431929 Root- +Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
6.7 97.3 GSM304677 Unstable mutant line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
6.1 97.1 GSM302923 seedling_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
5.8 97.0 GSM302922 seedling_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
5.7 96.9 GSM431932 Root- -Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
5.4 96.8 GSM431931 Root- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
5.1 96.6 GSM304654 Mutant stable line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
5.1 96.6 GSM304653 Mutant stable line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-3 44 Os02g0319800 AK111750.1 - WD40-like domain containing protein 2e-1 At5g54520 WD-40 repeat family protein C.G. S.X.
0.02 9e-2 40 Os09g0438100 AK063180.1 - Conserved hypothetical protein 1e-1 At1g07950 surfeit locus protein 5 family protein / SURF5 family protein C.G. S.X.
0.02 3e-1 38 Os01g0305900 NM_189302.1 - Typical A-type R2R3 Myb protein (Fragment) 3e-5 At4g38620 MYB4 C.G. S.X.
0.01 5e-3 44 Os02g0787300 AK120525.1 - MAP kinase kinase 2e-1 At5g05230 ubiquitin-protein ligase C.G. S.X.
0.01 9e-2 40 Os06g0638500 9634.m04167 - Protein kinase domain containing protein 3e-4 At1g25540 PFT1 (PHYTOCHROME AND FLOWERING TIME 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 7e-4 46 Arabidopsis thaliana At3g59380 825107 FTA (FARNESYLTRANSFERASE A) Encodes the alpha-subunit shared between protein farnesyltransferase and protein geranylgeranyltransferase-I. Involved in protein prenylation: covalent attachment of the C-15 isoprene farnesyl or the C-20 isoprene geranylgeranyl groups to the C-terminal end of some proteins. Involved in shoot and flower meristem homeostasis, and response to ABA and drought. Also regulates leaf cell shape. Mutant is epistatic to era1. - - - C.G. S.X.
0.08 1e-6 56 Glycine max GmaAffx.56889.1.S1_s_at AW781023 - - 3e-7 At3g59380 FTA (FARNESYLTRANSFERASE A) C.G. S.X.
0.59 0 789 Hordeum vulgare Contig12731_at Contig12731 - - 2e-4 At3g59380 FTA (FARNESYLTRANSFERASE A) C.G. S.X.
0.10 4e-12 73 Populus trichocarpa PtpAffx.61544.1.A1_at CA931045 hypothetical protein - 4e-19 At3g59380 FTA (FARNESYLTRANSFERASE A) C.G. S.X.
0.32 3e-71 270 Triticum aestivum Ta.13125.1.S1_at CD490995 - - 2e+0 At3g59380 FTA (FARNESYLTRANSFERASE A) C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1619581_at CB980639 - - 4e+0 At4g24130 unknown protein C.G. S.X.
0.26 5e-49 194 Zea mays Zm.12921.1.A1_at CA401711 hypothetical protein LOC100273635 - 6e+0 At5g27290 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0018346 The covalent attachment of a prenyl moiety to a protein amino acid.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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