CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0497900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 81.2 Os09g0497900 AK102511.1 - No apical meristem (NAM) protein domain containingprotein 1e-21 At3g18400 anac058 (Arabidopsis NAC domain containing protein 58) S.X. H.G.
0.36 44.0 Os08g0203700 AK100532.1 - Protein kinase domain containing protein 2e-3 At1g56120 kinase S.X. H.G.
0.21 17.9 Os05g0148900 AK120912.1 - Glutathione-S-transferase 19E50 1e+0 At1g03860 ATPHB2 (PROHIBITIN 2) S.X. H.G.
0.20 16.5 Os01g0734000 AY341845.1 - WRKY DNA binding protein 7e-13 At2g46130 WRKY43 S.X. H.G.
0.19 15.1 Os02g0767400 AK072314.1 - Curculin-like (mannose-binding) lectin domaincontaining protein 4e-7 At5g35370 ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding S.X. H.G.
0.12 7.2 Os09g0557500 AK059161.1 - Protein of unknown function DUF250 domaincontaining protein 2e-1 At1g09190 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
28.9 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.4 99.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 6e-31 137 Os06g0344900 9634.m02331 - No apical meristem (NAM) protein family protein 1e-3 At1g76420 CUC3 (CUP SHAPED COTYLEDON3) C.G. S.X.
0.10 7e-15 83 Os03g0624600 AK062675.1 - No apical meristem (NAM) protein domain containingprotein 1e-2 At5g18270 ANAC087 C.G. S.X.
0.08 7e-15 83 Os12g0123800 9640.m00213 - CUC2 4e-8 At5g18270 ANAC087 C.G. S.X.
0.08 5e-13 77 Os08g0511200 AK112104.1 - RNA-directed DNA polymerase (Reversetranscriptase) domain containing protein 3e+0 At5g26594 ARR24 (Arabidopsis response regulator 24) C.G. S.X.
0.07 1e-13 79 Os05g0421600 AK107746.1 - Conserved hypothetical protein 3e-18 At1g01720 ATAF1 C.G. S.X.
0.06 2e-18 95 Os11g0127600 AK067922.1 - No apical meristem (NAM) protein domain containingprotein 1e-11 At5g18270 ANAC087 C.G. S.X.
0.06 7e-12 73 Os02g0165400 9630.m00632 - - 2e-1 At3g43291 unknown protein C.G. S.X.
0.04 1e-13 79 Os09g0509100 AK060509.1 - No apical meristem (NAM) protein domain containingprotein 2e-1 At4g18692 unknown protein C.G. S.X.
0.03 7e-15 83 Os08g0535800 AK067906.1 - No apical meristem (NAM) protein domain containingprotein 5e-2 At5g62500 ATEB1B (END BINDING PROTEIN 1B) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 1e-21 105 Arabidopsis thaliana At3g18400 821369 anac058 (Arabidopsis NAC domain containing protein 58) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO - - - C.G. S.X.
0.07 2e-5 52 Glycine max GmaAffx.90313.1.S1_at CF806038 NAC domain protein - 9e-11 At5g39610 ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6) C.G. S.X.
0.10 4e-10 65 Hordeum vulgare Contig9284_at Contig9284 - - 3e-18 At3g04060 anac046 (Arabidopsis NAC domain containing protein 46) C.G. S.X.
0.20 6e-24 113 Populus trichocarpa PtpAffx.218166.1.S1_at pmrna33703 NAC domain protein, IPR003441 - 5e-18 At3g18400 anac058 (Arabidopsis NAC domain containing protein 58) C.G. S.X.
0.11 1e-21 105 Triticum aestivum Ta.9333.3.S1_a_at BJ288880 - - 5e-6 At5g53950 CUC2 (CUP-SHAPED COTYLEDON 2) C.G. S.X.
0.05 4e-3 42 Vitis vinifera 1609555_at CD719835 hypothetical protein LOC100261123 - 2e-30 At5g08790 ATAF2 C.G. S.X.
0.07 1e-3 44 Zea mays Zm.5882.1.A1_at AI637237 - - 2e-1 At1g52880 NAM (NO APICAL MERISTEM) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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