CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0487200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 79.7 Os09g0487200 AK070460.1 - Conserved hypothetical protein 3e-8 At2g42320 nucleolar protein gar2-related S.X. H.G.
0.47 62.3 Os01g0636500 CR278327 - Glycoside hydrolase, family 28 protein 6e-4 At1g10640 polygalacturonase S.X. H.G.
0.47 62.3 Os06g0624700 AK110884.1 - Conserved hypothetical protein 2e-7 At2g33570 unknown protein S.X. H.G.
0.40 51.1 Os08g0550500 AK058423.1 - Conserved hypothetical protein 4e+0 At5g41440 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.40 51.1 Os02g0666500 AK069029.1 - Cytochrome P450 1e-3 At5g58860 CYP86A1 (CYTOCHROME P450 86 A1) S.X. H.G.
0.33 38.8 Os02g0161800 AK105544.1 - Peroxidase precursor (EC 1.11.1.7) 7e-1 At1g48750 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.29 31.1 Os11g0462100 AK102820.1 - Glycoside hydrolase, family 18 protein 8e-1 At3g01010 UDP-glucose/GDP-mannose dehydrogenase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
26.2 99.5 GSM429984 Rice wild-type panicle rep2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
16.6 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM429982 Rice wild-type panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
10.9 98.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM159201 Inflorescence (P5, 15 - 22 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
10.6 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.33 2e-81 305 Os08g0505200 AK067190.1 - Conserved hypothetical protein 4e-10 At2g42320 nucleolar protein gar2-related C.G. S.X.
0.01 1e-2 44 Os05g0277200 AK110612.1 - Conserved hypothetical protein 3e+0 At5g05670 signal recognition particle binding C.G. S.X.
0.01 5e-2 42 Os06g0551900 9634.m03395 - - 5e-1 At1g48610 AT hook motif-containing protein C.G. S.X.
0.01 5e-2 42 Os11g0295900 9639.m01770 - Pathogenesis-related transcriptional factor andERF domain containing protein 1e-5 At5g65510 AIL7 (AINTEGUMENTA-like 7) C.G. S.X.
0.01 2e-1 40 Os01g0916000 AK106300.1 - Conserved hypothetical protein 1e-2 At5g02560 HTA12 C.G. S.X.
0.01 7e-1 38 Os04g0690400 AK102981.1 - Hypothetical protein 3e-2 At1g49010 myb family transcription factor C.G. S.X.
0.01 7e-1 38 Os08g0170200 9636.m00671 - Disease resistance protein family protein 3e-1 At4g21105 cytochrome-c oxidase/ electron carrier C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 3e-8 61 Arabidopsis thaliana At2g42320 818833 nucleolar protein gar2-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA - - - C.G. S.X.
0.04 1e-4 50 Glycine max Gma.2048.1.S1_at BQ273518 - - 1e-7 At2g42320 nucleolar protein gar2-related C.G. S.X.
0.19 3e-77 289 Hordeum vulgare Contig19475_at Contig19475 - - 2e-9 At2g42320 nucleolar protein gar2-related C.G. S.X.
0.07 1e-4 50 Populus trichocarpa PtpAffx.16901.1.S1_at CX660057 hypothetical protein - 1e-11 At3g57780 - C.G. S.X.
0.01 6e-3 44 Triticum aestivum TaAffx.66037.1.S1_at BJ218262 - - 2e-2 At1g50590 pirin, putative C.G. S.X.
0.03 3e-2 40 Vitis vinifera 1606524_at CB979170 hypothetical protein LOC100266440 - 2e-19 At3g01810 - C.G. S.X.
0.34 1e-66 254 Zea mays Zm.2972.1.A1_at BM073882 - - 4e-3 At3g01810 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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