CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0483700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 93.1 Os09g0483700 9637.m02748 - - 2e+0 At5g04760 myb family transcription factor S.X. H.G.
0.71 89.6 Os06g0726900 9634.m04971 - Zn-finger, modified RING domain containing protein 2e-1 At1g52740 HTA9 (HISTONE H2A PROTEIN 9) S.X. H.G.
0.70 88.4 Os10g0402400 NM_196396.1 - Transferase family protein 1e+1 At5g11590 TINY2 (TINY2) S.X. H.G.
0.69 87.9 Os03g0193700 9639.m02916 - Rab geranylgeranyltransferase, beta subunit 3e-1 At2g46650 CB5-C (CYTOCHROME B5 ISOFORM C) S.X. H.G.
0.63 82.7 Os04g0453300 9632.m03584 - Monosaccharide transporter 1 7e-1 At1g11260 STP1 (SUGAR TRANSPORTER 1) S.X. H.G.
0.60 79.7 Os02g0734700 9630.m04916 - Conserved hypothetical protein 1e+0 At1g17520 DNA-binding protein, putative S.X. H.G.
0.57 77.0 Os04g0500600 AK107850.1 - Hypothetical protein 8e+0 At3g45525 - S.X. H.G.
0.57 77.0 Os03g0597300 NM_184803.1 - - 1e+0 At3g42130 glycine-rich protein S.X. H.G.
0.56 76.3 Os10g0207300 NM_195478.1 - - 4e-1 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) S.X. H.G.
0.56 76.3 Os01g0717275 9629.m05037 - - 2e+0 At1g29790 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
194.2 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
112.9 100.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.6 98.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.2 97.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 2e-118 426 Os01g0839100 AY077725.1 - Zn-finger, C2H2 type domain containing protein 2e+0 At2g28710 zinc finger (C2H2 type) family protein C.G. S.X.
0.09 9e-16 85 Os05g0460900 9633.m03585 - - 2e+1 At5g59040 COPT3 C.G. S.X.
0.07 8e-10 65 Os04g0162500 AK108645.1 - The start codon is not identified. 9e-3 At2g28200 nucleic acid binding / transcription factor/ zinc ion binding C.G. S.X.
0.05 8e-10 65 Os01g0651900 NM_192380.1 - - 4e-1 At2g23210 UDP-glycosyltransferase/ transferase, transferring glycosyl groups C.G. S.X.
0.03 4e-12 73 Os02g0727400 AK068514.1 - Conserved hypothetical protein 3e+0 At5g51940 NRPB6A C.G. S.X.
0.03 5e-11 69 Os05g0113300 AK106443.1 - Conserved hypothetical protein 4e-4 At3g53720 ATCHX20 (CATION/H+ EXCHANGER 20) C.G. S.X.
0.02 4e-12 73 Os02g0727300 AK120552.1 - U box domain containing protein 1e-1 At5g01010 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Arabidopsis thaliana At5g04760 830354 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMF - - - C.G. S.X.
0.04 1e-1 38 Glycine max HgAffx.22750.1.S1_at BG310800 - - 4e+0 At2g14750 APK (APS KINASE) C.G. S.X.
0.32 2e-56 218 Hordeum vulgare Contig23823_at Contig23823 - - 1e+0 At1g23420 INO (INNER NO OUTER) C.G. S.X.
0.03 5e-1 36 Populus trichocarpa PtpAffx.223955.1.S1_x_at pmrna42181 hypothetical protein - 6e-1 Atmg01120 - C.G. S.X.
0.08 5e-10 65 Triticum aestivum Ta.1897.1.S1_x_at CD453080 - - 1e-1 At2g28710 zinc finger (C2H2 type) family protein C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1608373_at CF518730 hypothetical protein LOC100258699 - 4e+0 At5g05430 - C.G. S.X.
0.05 4e-2 38 Zea mays Zm.9756.1.A1_at BM338065 - - 5e+0 At5g38800 AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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