CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0481800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.8 Os09g0481800 AK062669.1 - Nitrogen-fixing NifU, C-terminal domain containingprotein 7e+0 At5g50240 PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2) S.X. H.G.
0.60 79.7 Os08g0541400 AK068255.1 - Peptidylprolyl isomerase, FKBP-type domaincontaining protein 1e-17 At2g43560 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein S.X. H.G.
0.55 73.7 Os06g0663800 AK105843.1 - FKBP-type peptidyl-prolyl cis-trans isomerase 3,chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase)(AtFKBP13) (FK506 binding protein 1) 2e+0 At5g64350 FKBP12 (FK506-BINDING PROTEIN) S.X. H.G.
0.43 55.4 Os03g0685000 AK059896.1 - Ferredoxin 5e-10 At1g32550 ferredoxin family protein S.X. H.G.
0.40 51.1 Os04g0591000 AK072902.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e-1 At3g49940 LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38) S.X. H.G.
0.30 32.7 Os04g0626400 AK059851.1 - Calycin family protein 7e-16 At3g47860 apolipoprotein D-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.1 98.2 GSM207560 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
10.2 98.0 GSM207559 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
9.3 97.9 GSM207563 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
9.2 97.9 GSM431940 Shoot- -Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
8.9 97.8 GSM174890 G mock 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
8.7 97.8 GSM207562 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
8.5 97.7 GSM431939 Shoot- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
8.4 97.7 GSM421695 XOO, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
8.2 97.7 GSM207558 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
7.8 97.6 GSM207564 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-1 38 Os07g0573900 9635.m03847 - Hypothetical protein 6e+0 At1g12320 unknown protein C.G. S.X.
0.02 1e-2 42 Os10g0550400 AK109724.1 - Conserved hypothetical protein 3e+0 At1g50650 stigma-specific Stig1 family protein C.G. S.X.
0.02 5e-2 40 Os02g0484200 AK103832.1 - Transferase family protein 1e+1 At5g18180 Gar1 RNA-binding region family protein C.G. S.X.
0.02 5e-2 40 Os03g0643900 AK069402.1 - Hypothetical protein 6e-1 At1g06540 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e+0 32 Arabidopsis thaliana At5g50240 835089 PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2) L-isoaspartyl methyltransferase 2 (PIMT2)gene, alternatively spliced. - - - C.G. S.X.
0.03 4e-2 40 Glycine max GmaAffx.4946.1.S1_at BI972402 - - 3e+0 At4g26701 DNA binding / DNA topoisomerase type I C.G. S.X.
0.30 8e-72 270 Hordeum vulgare Contig25351_at Contig25351 - - 5e+0 At4g21926 unknown protein C.G. S.X.
0.06 4e-5 50 Populus trichocarpa PtpAffx.22609.2.S1_a_at BU885016 hypothetical protein - 1e-4 At2g33180 unknown protein C.G. S.X.
0.17 2e-18 93 Triticum aestivum TaAffx.111908.1.S1_at CA630711 - - 4e+0 At4g21926 unknown protein C.G. S.X.
0.07 3e-2 38 Vitis vinifera 1617402_at CF373232 - - 1e+0 At5g55450 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.03 5e-2 38 Zea mays Zm.13777.1.A1_at CK347797 - - 8e-8 At1g27435 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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