CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0478600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.47 62.3 Os09g0478600 AK109529.1 - The start codon is not identified. 5e+0 At3g06890 unknown protein S.X. H.G.
0.20 16.5 Os08g0408500 AK068312.1 - Pathogenesis-related transcriptional factor andERF domain containing protein 2e-1 At1g53170 ERF8 S.X. H.G.
0.11 6.5 Os01g0880200 AK100345.1 - Glycosyl transferase, family 8 protein 1e-13 At1g77130 PGSIP2 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 2) S.X. H.G.
0.09 4.9 Os08g0557600 AK102459.1 - Monodehydroascorbate reductase (EC 1.6.5.4) (MDAR)(Ascorbate free radical reductase) (AFR reductase) 2e-20 At5g03630 ATMDAR2 S.X. H.G.
0.08 4.2 Os05g0176700 AK071729.1 - Conserved hypothetical protein 6e-6 At5g23100 unknown protein S.X. H.G.
0.07 3.7 Os02g0753800 AK101787.1 - Annexin p34 2e-1 At5g10220 ANN6 (ANNEXIN ARABIDOPSIS 6) S.X. H.G.
0.02 1.0 Os05g0209500 AK105188.1 - Conserved hypothetical protein 5e+0 At5g48530 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.4 97.9 GSM159172 Rice coleoptiles, 4 days old, aerobic, replicate N.1 (sample#9) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
8.6 97.8 GSM159262 Drought stress, biological rep 1 GSE6901 Expression data for stress treatment in rice seedlings
8.4 97.7 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
7.7 97.6 GSM159263 Drought stress, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
7.5 97.5 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
7.3 97.5 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
7.1 97.4 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
6.8 97.3 GSM159264 Drought stress, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
6.7 97.3 GSM278855 KT95-418-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
5.7 96.9 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 5e-13 75 Os08g0492500 AK065316.1 - - 5e-1 At1g02405 proline-rich family protein C.G. S.X.
0.06 5e-4 46 Os07g0223900 NM_186638.1 - - 1e+0 At5g66070 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.05 2e-6 54 Os06g0547500 AK107081.1 - Conserved hypothetical protein 6e-2 At5g54460 wound-responsive protein-related C.G. S.X.
0.03 2e-9 63 Os01g0935700 AK069403.1 - Cytochrome c1 (Fragment) 3e-52 At3g27240 cytochrome c1, putative C.G. S.X.
0.03 2e-3 44 Os01g0242300 AK070082.1 - Optic atrophy 3 family protein 5e-1 At5g65610 unknown protein C.G. S.X.
0.03 2e-3 44 Os01g0266100 AK063246.1 - Zn-finger, RING domain containing protein 7e+0 At5g55750 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.02 8e-6 52 Os01g0785700 AY129829.2 - Protein prenyltransferase domain containingprotein 9e-1 At2g23040 unknown protein C.G. S.X.
0.02 2e-1 38 Os04g0685700 AB117879 - Conserved hypothetical protein 2e-1 At1g29490 auxin-responsive family protein C.G. S.X.
0.01 3e-8 59 Os03g0240900 AK120108.1 - Tubulin/FtsZ, GTPase domain containing protein 4e-2 At1g19485 AT hook motif-containing protein C.G. S.X.
0.01 2e-1 38 Os07g0188000 AK100285.1 - Argonaute protein 3e-5 At2g27880 AGO5 (ARGONAUTE 5) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e+0 32 Arabidopsis thaliana At3g06890 819874 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.04 1e-1 38 Glycine max GmaAffx.73473.1.S1_at BM086203 - - 5e-33 At3g06820 mov34 family protein C.G. S.X.
0.17 1e-38 159 Hordeum vulgare Contig8172_at Contig8172 - - 2e+0 At5g62350 invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22) C.G. S.X.
0.06 3e-2 40 Populus trichocarpa PtpAffx.66664.1.S1_at CK107059 - - 8e-2 At1g29490 auxin-responsive family protein C.G. S.X.
0.12 1e-25 117 Triticum aestivum Ta.11425.1.S1_s_at CK215228 - - 3e+1 At5g03500 transcription coactivator C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1616806_at CF605749 hypothetical protein LOC100259004 - 6e-2 At2g01340 unknown protein C.G. S.X.
0.11 7e-19 93 Zea mays Zm.779.1.A1_at BG842450 RING-H2 finger protein - 8e+0 At4g33020 ZIP9 C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage