CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0474000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 78.0 Os09g0474000 AK108319.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 2e+0 At2g23290 AtMYB70 (myb domain protein 70) S.X. H.G.
0.55 73.7 Os02g0108800 AK099951.1 - Conserved hypothetical protein 5e-2 At1g04555 unknown protein S.X. H.G.
0.46 60.9 Os05g0560300 AK065592.1 - Protein kinase domain containing protein 4e-3 At5g58540 protein kinase family protein S.X. H.G.
0.44 58.1 Os09g0423400 AK072133.1 - Biopterin transport-related protein BT1 familyprotein 3e-4 At5g10820 integral membrane transporter family protein S.X. H.G.
0.42 53.9 Os06g0692100 AK110293.1 - Protein kinase domain containing protein 1e-1 At1g48480 RKL1 S.X. H.G.
0.32 36.3 Os09g0280500 AK106988.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 7e-2 At3g12250 TGA6 (TGACG MOTIF-BINDING FACTOR 6) S.X. H.G.
0.27 27.5 Os01g0218100 AK068593.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 1e+0 At5g24890 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.9 98.9 GSM431932 Root- -Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
17.8 98.9 GSM431931 Root- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
15.9 98.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.5 98.7 GSM431926 Root- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
12.8 98.4 GSM431925 Root- +Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
11.1 98.2 GSM431928 Root- -Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
9.5 97.9 GSM431927 Root- -Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
9.1 97.9 GSM100444 Rice Bala 0ppm Arsenate (Control) Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
8.6 97.8 GSM100439 Rice Azucena 0ppm Arsenate (Control) Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
8.1 97.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 8e-41 169 Os08g0487100 AK107150.1 - BZIP transcription factor BZI-2 3e-3 At1g65090 unknown protein C.G. S.X.
0.05 9e-7 56 Os07g0124300 9635.m00234 - - 3e-1 At5g53590 auxin-responsive family protein C.G. S.X.
0.04 8e-4 46 Os02g0132500 AK070887.1 - BZIP transcription factor 1e-8 At4g34588 CPuORF2 (Conserved peptide upstream open reading frame 2) C.G. S.X.
0.02 3e-3 44 Os05g0454200 AK101945.1 - Protein of unknown function DUF315 domaincontaining protein 1e-15 At4g38430 ROPGEF1 C.G. S.X.
0.01 5e-5 50 Os11g0114600 AK071924.1 - Hypothetical protein 6e-4 At5g55560 protein kinase family protein C.G. S.X.
0.01 1e-2 42 Os12g0114100 AK072172.1 - Protein kinase domain containing protein 4e-4 At5g55560 protein kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At2g23290 816861 AtMYB70 (myb domain protein 70) Member of the R2R3 factor gene family. - - - C.G. S.X.
0.03 2e+0 34 Glycine max PsAffx.psZO001iE10r_at PsAffx.psZO001iE10r - - 4e+0 At4g17500 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) C.G. S.X.
0.04 9e-10 63 Hordeum vulgare Contig7429_s_at Contig7429 - - 5e-8 At2g18162 CPuORF1 (Conserved peptide upstream open reading frame 1) C.G. S.X.
0.03 6e-4 46 Populus trichocarpa PtpAffx.12678.1.A1_at DN487193 - - 2e-1 At2g23780 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.06 5e-4 46 Triticum aestivum TaAffx.57869.1.S1_s_at CA624383 - - 1e+0 At5g16390 CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1) C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1613707_at CB912108 - - 8e-6 At3g62420 ATBZIP53 (BASIC REGION/LEUCINE ZIPPER MOTIF 53) C.G. S.X.
0.23 4e-33 141 Zea mays Zm.8806.1.A1_at BM075728 - - 2e+1 At5g35640 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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