CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0472900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.7 Os09g0472900 BI797815 - Expansin-related protein 2 precursor (AtEXPR2)(Ath-ExpGamma-1.1) 8e+0 At3g03920 Gar1 RNA-binding region family protein S.X. H.G.
0.75 91.9 Os03g0250400 AK121385.1 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 1e+0 At5g59610 DNAJ heat shock N-terminal domain-containing protein S.X. H.G.
0.75 91.9 Os06g0253100 AK105317.1 - Heat shock protein Hsp20 domain containing protein 9e-2 At1g12665 - S.X. H.G.
0.71 89.6 Os01g0135800 AK063681.1 - 17 Kd heat shock protein 6e+0 At5g46780 VQ motif-containing protein S.X. H.G.
0.56 76.3 Os12g0630100 AK069182.1 - Thaumatin-like protein precursor 1e-1 At4g31460 ribosomal protein L28 family protein S.X. H.G.
0.56 76.3 Os09g0462400 9637.m02534 - Patatin family protein 9e+0 At3g26510 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein S.X. H.G.
0.50 68.0 Os11g0244200 AK107883.1 - Pisum sativum 17.9 kDa heat shock protein(hsp17.9) (Fragment) 1e-3 At1g07400 17.8 kDa class I heat shock protein (HSP17.8-CI) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
100.6 100.0 GSM159207 Seed (S1, 0 - 2 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
91.0 100.0 GSM159209 Seed (S1, 0 - 2 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
61.8 99.9 GSM159208 Seed (S1, 0 - 2 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
24.6 99.4 GSM116402 Seedling_BAP treated_rep2 GSE5167 Rice seedling hormone treatment
20.8 99.2 GSM116401 Seedling_BAP treated_rep1 GSE5167 Rice seedling hormone treatment
18.3 98.9 GSM154959 Leaf_OsRR6-overexpressor_replicate 1 GSE6720 Gene expression in OsRR6-overexpression line
16.2 98.8 GSM116195 Seedling_Control_rep1 GSE5167 Rice seedling hormone treatment
11.4 98.2 GSM116398 Seedling_Control_rep2 GSE5167 Rice seedling hormone treatment
5.9 97.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
4.8 96.5 GSM116400 Seedling_IAA treated_rep2 GSE5167 Rice seedling hormone treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.40 1e-61 238 Os09g0473200 9637.m02643 - - 9e+0 At5g53980 ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52) C.G. S.X.
0.03 1e-2 42 Os11g0262200 9639.m01448 - - 4e-1 At4g23960 F-box family protein C.G. S.X.
0.01 1e+0 34 Os07g0131300 CB634389 - - 7e-5 At5g59260 lectin protein kinase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e+0 30 Arabidopsis thaliana At3g03920 821062 Gar1 RNA-binding region family protein F:RNA binding, rRNA binding;P:rRNA processing;C:chloroplast thylakoid membrane, nucleolus;MPBOFVA - - - C.G. S.X.
0.05 3e+0 32 Glycine max GmaAffx.55791.1.S1_at CA801032 - - 1e+0 At3g24535 unknown protein C.G. S.X.
0.06 4e+0 30 Hordeum vulgare HVSMEl0025J01f_s_at HVSMEl0025J01f - - 1e+1 At5g65166 unknown protein C.G. S.X.
0.03 7e-1 34 Populus trichocarpa PtpAffx.221853.1.S1_at pmrna38942 hypothetical protein - 2e+1 At5g24990 unknown protein C.G. S.X.
0.04 2e+0 32 Triticum aestivum Ta.7867.1.A1_at BQ160822 - - 4e+0 At1g01640 speckle-type POZ protein-related C.G. S.X.
0.06 6e-1 32 Vitis vinifera 1613519_at CF404068 hypothetical protein LOC100267388 - 2e+0 At1g24145 unknown protein C.G. S.X.
0.04 4e+0 30 Zea mays Zm.4897.1.S1_at AI782873 - - 2e+1 At5g42770 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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