CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0457900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 94.6 Os09g0457900 AK067195.1 - AP2 domain containing protein RAP2.6 (Fragment) 5e-1 At3g23230 ethylene-responsive factor, putative S.X. H.G.
0.73 91.1 Os05g0552800 9633.m04468 - Conserved hypothetical protein 4e+0 At5g44060 unknown protein S.X. H.G.
0.67 87.2 Os03g0315400 BI807304 - MYB-related protein 340 4e+0 At5g27247 unknown protein S.X. H.G.
0.60 79.7 Os03g0292100 9631.m01785 - Protein phosphatase 2C family protein 8e-1 At4g08260 protein phosphatase 2C, putative / PP2C, putative S.X. H.G.
0.44 58.1 Os02g0134200 AK108331.1 - Conserved hypothetical protein 5e-1 At5g12330 LRP1 (LATERAL ROOT PRIMORDIUM 1) S.X. H.G.
0.38 46.9 Os07g0680600 AK059307.1 - Conserved hypothetical protein 5e+0 At5g18200 UTP:galactose-1-phosphate uridylyltransferase/ ribose-5-phosphate adenylyltransferase S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
50.3 99.9 GSM375647 Taichung 65_shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
49.5 99.9 GSM375648 Taichung 65_shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
43.7 99.9 GSM375649 Taichung 65_shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
21.9 99.3 GSM375770 gid2-1_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
20.3 99.1 GSM375769 gid2-1_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
17.9 98.9 GSM159182 Mature leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
13.7 98.5 GSM375772 gid2-1_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
10.9 98.1 GSM375775 slr1 (k1001)_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
10.7 98.1 GSM159181 Mature leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
10.0 98.0 GSM375773 slr1 (k1001)_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 4e-74 280 Os08g0474000 AK062882.1 - AP2 domain containing protein RAP2.6 (Fragment) 1e-4 At1g22985 AP2 domain-containing transcription factor, putative C.G. S.X.
0.15 2e-45 184 Os02g0764700 AK107146.1 - Pathogenesis-related transcriptional factor andERF domain containing protein 3e-5 At1g71130 AP2 domain-containing transcription factor, putative C.G. S.X.
0.10 2e-26 121 Os12g0168100 AK107125.1 - AP2 domain containing protein RAP2.6 (Fragment) 1e-5 At1g43160 RAP2.6 (related to AP2 6) C.G. S.X.
0.07 1e-18 95 Os08g0537900 AK119425.1 - AP2 domain containing protein RAP2.2 (Fragment) 6e-12 At1g52630 unknown protein C.G. S.X.
0.07 5e-18 93 Os05g0437100 9633.m03366 - Pathogenesis-related transcriptional factor andERF domain containing protein 2e-6 At1g43160 RAP2.6 (related to AP2 6) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 5e-1 36 Arabidopsis thaliana At3g23230 821901 ethylene-responsive factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. - - - C.G. S.X.
0.06 5e-5 50 Glycine max GmaAffx.93567.1.S1_at CF808176 - - 1e-3 At4g38680 GRP2 (GLYCINE RICH PROTEIN 2) C.G. S.X.
0.23 2e-54 212 Hordeum vulgare Contig2471_at Contig2471 - - 1e-1 At5g44210 ERF9 (ERF DOMAIN PROTEIN 9) C.G. S.X.
0.05 8e-4 46 Populus trichocarpa PtpAffx.207270.1.S1_at pmrna14427 AP2/ERF domain-containing transcription factor - 1e-3 At1g43160 RAP2.6 (related to AP2 6) C.G. S.X.
0.23 2e-47 190 Triticum aestivum Ta.4470.1.S1_at BJ266870 - - 2e-2 At1g22985 AP2 domain-containing transcription factor, putative C.G. S.X.
0.11 3e-3 42 Vitis vinifera 1609683_at CF604955 hypothetical protein LOC100249982 - 2e-11 At2g47520 AP2 domain-containing transcription factor, putative C.G. S.X.
0.07 1e-6 54 Zea mays Zm.17956.1.A1_at CF637428 - - 2e+0 At3g20570 plastocyanin-like domain-containing protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage