CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0446900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.69 87.9 Os09g0446900 9637.m02407 - - 4e+0 At5g62998 unknown protein S.X. H.G.
0.75 91.9 Os04g0296350 9632.m02132 - - 5e+0 At5g23250 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative S.X. H.G.
0.58 77.0 Os01g0561900 NM_193527.1 - - 6e-1 At2g27710 60S acidic ribosomal protein P2 (RPP2B) S.X. H.G.
0.53 71.3 Os03g0603000 9631.m03905 - - 2e+1 At5g26840 unknown protein S.X. H.G.
0.52 69.6 Os08g0135700 9636.m00338 - - 2e-1 At5g44450 methyltransferase S.X. H.G.
0.48 63.7 Os02g0506300 9635.m01221 - - 2e+0 At1g49450 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.38 46.9 Os09g0334401 9637.m01384 - - 6e-1 At2g23320 WRKY15 S.X. H.G.
0.36 44.0 Os05g0179201 9633.m00765 - - 3e+0 At5g05690 CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF) S.X. H.G.
0.36 44.0 Os04g0366400 9632.m02815 - - 4e-6 At1g21245 wall-associated kinase-related S.X. H.G.
0.35 41.7 Os08g0418800 9636.m03231 - - 8e-2 At4g30370 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
274.9 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
78.0 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.1 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.7 96.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 8e-6 52 Os10g0543700 NM_197601.1 - - 5e-1 At5g19260 unknown protein C.G. S.X.
0.03 3e-5 50 Os01g0884900 AK063875.1 - Hypothetical protein 2e-38 At1g22850 - C.G. S.X.
0.03 1e-4 48 Os02g0198800 AK105560.1 - Plant protein of unknown function DUF868 familyprotein 2e-1 At3g13229 unknown protein C.G. S.X.
0.03 1e-4 48 Os12g0506700 9640.m03127 - VMP3 protein 2e-1 At3g59600 NRPB8B C.G. S.X.
0.02 3e-5 50 Os10g0204100 AK120883.1 - Zn-finger, RING domain containing protein 3e-13 At3g09770 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 5e-4 46 Os01g0868800 9629.m06426 - - 5e+0 At1g68670 myb family transcription factor C.G. S.X.
0.02 5e-4 46 Os11g0174432 9639.m00671 - - 9e-1 At3g54480 SKIP5 (SKP1/ASK-INTERACTING PROTEIN 5) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 4e+0 32 Arabidopsis thaliana At5g62998 6241122 unknown protein F:unknown;P:unknown;C:unknown - - - C.G. S.X.
0.04 2e-2 40 Glycine max Gma.3176.1.S1_a_at BU549115 - - 4e-13 At1g07480 transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L) C.G. S.X.
0.04 2e-3 42 Hordeum vulgare HZ42B13r_at HZ42B13r - - 9e-1 At4g14320 60S ribosomal protein L36a/L44 (RPL36aB) C.G. S.X.
0.05 8e-2 38 Populus trichocarpa PtpAffx.115945.1.S1_s_at CN521589 hypothetical protein - 5e-2 At4g00355 unknown protein C.G. S.X.
0.06 1e-2 40 Triticum aestivum TaAffx.23472.1.S1_at CA734792 - - 6e+0 At5g53030 unknown protein C.G. S.X.
0.03 2e-2 38 Vitis vinifera 1610294_at CF373126 - - 4e-13 At4g25835 AAA-type ATPase family protein C.G. S.X.
0.05 2e-3 42 Zea mays Zm.12612.1.A1_at BU050513 - - 6e-1 At1g23260 MMZ1 (MMS ZWEI HOMOLOGUE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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