Gene omics information

Query gene ID	Os09g0433600
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.8	Os09g0433600	AK058686.1	-	Histone H4	2e-20	At1g07660	histone H4	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	Os01g0756900	AK058427.1	-	Conserved hypothetical protein	8e-2	At1g67860	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	Os03g0279200	CA753594	-	Histone H2A	1e-7	At5g02560	HTA12	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	Os01g0153100	CB662157	-	Histone H2B.1	8e-21	At1g07790	HTB1	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.29	31.1	Os10g0418000	AF193345.1	-	Histone H2A.F/Z (At3g54560)	6e-10	At1g52740	HTA9 (HISTONE H2A PROTEIN 9)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.22	19.4	Os05g0466600	AK119240.1	-	-	7e-18	At5g59690	histone H4	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.8	97.3	GSM159193	Inflorescence (P2, 3 - 5 cm), biological rep 2	GSE6893	Expression data for reproductive development in rice
6.4	97.2	GSM159194	Inflorescence (P2, 3 - 5 cm), biological rep 3	GSE6893	Expression data for reproductive development in rice
5.6	96.9	GSM409433	9311_young panicle 2cm, biological rep4	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.4	96.8	GSM99859	TCHW P2_m103 control, biological rep2	GSE4438	Expression data from rice under salinity stress
5.3	96.7	GSM67052	FL478 control replicate 1	GSE3053	Rice salt expression
5.2	96.7	GSM99873	TCHW P16_agami salt stress, biological rep1	GSE4438	Expression data from rice under salinity stress
5.2	96.7	GSM409430	9311_young panicle 2cm, biological rep1	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.1	96.6	GSM99880	TCHW P22_ir29 salt stress, biological rep1	GSE4438	Expression data from rice under salinity stress
5.0	96.6	GSM159192	Inflorescence (P2, 3 - 5 cm), biological rep 1	GSE6893	Expression data for reproductive development in rice
4.9	96.5	GSM99881	TCHW P23_ir29 salt stress, biological rep2	GSE4438	Expression data from rice under salinity stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	2e-151	535	Os05g0462700	AK105816.1	-	Histone H4 variant TH011	6e-24	At5g59690	histone H4	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.54	4e-137	488	Os10g0539500	AK119699.1	-	Histone H4	6e-24	At5g59690	histone H4	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	2e-142	506	Os05g0466600	AK119240.1	-	-	7e-18	At5g59690	histone H4	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	5e-1	36	Os12g0123600	AK100760.1	-	Nucleoside-triphosphatase (EC 3.6.1.15)(Nucleoside triphosphate phosphohydrolase) (NTPase)(Apyrase)	4e+0	At3g46170	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	2e-20	99	Arabidopsis thaliana	At1g07660	837279	histone H4	F:DNA binding;P:nucleosome assembly;C:plasma membrane, chloroplast;MOPFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.60	5e-74	278	Glycine max	PsAffx.C1000260_s_at	PsAffx.C1000260	-	-	9e-10	At5g59690	histone H4	C.G.	S.X.	Please select
0.62	2e-139	494	Hordeum vulgare	Contig20_at	Contig20	-	-	3e-22	At5g59690	histone H4	C.G.	S.X.	Please select
0.35	1e-16	87	Populus trichocarpa	Ptp.6669.1.S1_at	CX170418	histone H4	-	5e-55	At1g07660	histone H4	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.58	6e-144	510	Triticum aestivum	TaAffx.132315.2.S1_x_at	BE493709	-	-	3e-22	At5g59690	histone H4	C.G.	S.X.	Please select
0.48	3e-19	93	Vitis vinifera	1613076_at	CB970842	-	-	2e-42	At5g59690	histone H4	C.G.	S.X.	Please select
0.54	2e-123	440	Zea mays	Zm.6721.12.A1_s_at	BG265991	Histone H4	-	6e-18	At1g07660	histone H4	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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