CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0423400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os09g0423400 AK072133.1 - Biopterin transport-related protein BT1 familyprotein 3e-4 At5g10820 integral membrane transporter family protein S.X. H.G.
0.53 71.3 Os09g0474000 AK108319.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 2e+0 At2g23290 AtMYB70 (myb domain protein 70) S.X. H.G.
0.38 46.9 Os05g0560300 AK065592.1 - Protein kinase domain containing protein 4e-3 At5g58540 protein kinase family protein S.X. H.G.
0.36 44.0 Os06g0691800 AK065392.1 - - 1e-4 At2g47060 serine/threonine protein kinase, putative S.X. H.G.
0.35 41.7 Os02g0636700 AK069779.1 - GRAM domain containing protein 2e-3 At5g23370 GRAM domain-containing protein / ABA-responsive protein-related S.X. H.G.
0.21 17.9 Os03g0253600 AK061138.1 - - 2e-2 At1g10770 invertase/pectin methylesterase inhibitor family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
30.2 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.7 98.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.4 98.5 GSM100440 Rice Azucena 0ppm Arsenate (Control) Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
13.4 98.5 GSM431931 Root- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
11.3 98.2 GSM431926 Root- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
11.0 98.2 GSM100443 Rice Bala 0ppm Arsenate (Control) Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
10.2 98.0 GSM431925 Root- +Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
9.5 97.9 GSM100439 Rice Azucena 0ppm Arsenate (Control) Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
7.6 97.5 GSM431932 Root- -Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
7.6 97.5 GSM431927 Root- -Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 2e-47 192 Os07g0273500 AK063067.1 - Hypothetical protein 6e+0 At3g54300 ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) C.G. S.X.
0.06 3e-61 238 Os06g0569700 AK119285.1 - Conserved hypothetical protein 1e+0 At1g07840 leucine zipper factor-related C.G. S.X.
0.05 2e-16 89 Os06g0186700 AK073039.1 - Biopterin transport-related protein BT1 familyprotein 7e-2 At1g79710 integral membrane transporter family protein C.G. S.X.
0.05 1e-11 73 Os04g0499100 AK072725.1 - Biopterin transport-related protein BT1 familyprotein 4e+0 At5g47550 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.03 6e-4 48 Os06g0129600 9634.m00302 - Lipolytic enzyme, G-D-S-L family protein 2e-2 At2g37580 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 6e-10 67 Os05g0376400 AK065076.1 - Biopterin transport-related protein BT1 familyprotein 1e-1 At5g10820 integral membrane transporter family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-4 48 Arabidopsis thaliana At5g10820 830949 integral membrane transporter family protein F:transporter activity;P:transport;C:membrane;OPBMF - - - C.G. S.X.
0.01 2e+0 36 Glycine max PsAffx.C4000065_at PsAffx.C4000065 - - 6e-2 At1g80130 binding C.G. S.X.
0.02 1e-1 38 Hordeum vulgare HV11K06u_at HV11K06u - - 2e+0 At3g05260 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.04 1e-7 59 Populus trichocarpa PtpAffx.214250.1.S1_at pmrna27724 hypothetical protein - 5e-14 At5g10820 integral membrane transporter family protein C.G. S.X.
0.03 3e-4 48 Triticum aestivum Ta.7660.2.S1_at BJ316772 - - 1e+0 At3g55880 unknown protein C.G. S.X.
0.03 1e+0 34 Vitis vinifera 1615302_at CF414670 - - 7e-1 At3g44716 unknown protein C.G. S.X.
0.01 1e-1 38 Zea mays Zm.6436.1.A1_at AI665672 - - 1e+0 At1g07950 surfeit locus protein 5 family protein / SURF5 family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage