CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0414500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.86 96.4 Os09g0414500 AK058840.1 - ZF-HD homeobox protein 5e-3 At3g28917 MIF2 (MINI ZINC FINGER 2) S.X. H.G.
0.83 95.8 Os05g0518300 AK061147.1 - Lipolytic enzyme, G-D-S-L family protein 8e-4 At1g71691 GDSL-motif lipase/hydrolase family protein S.X. H.G.
0.83 95.8 Os02g0816200 AK060243.1 - Lipolytic enzyme, G-D-S-L family protein 2e-4 At3g04290 LTL1 (LI-TOLERANT LIPASE 1) S.X. H.G.
0.75 91.9 Os10g0150300 BI805240 - Protein of unknown function DUF1210 family protein 2e+0 At5g17840 chaperone protein dnaJ-related S.X. H.G.
0.73 91.1 Os10g0551700 AK107851.1 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 7e-3 At2g35960 NHL12 S.X. H.G.
0.50 68.0 Os01g0814100 AK061173.1 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 5e-1 At2g14170 ALDH6B2 S.X. H.G.
0.50 68.0 Os07g0565800 AK062834.1 - Conserved hypothetical protein 2e+0 At3g25577 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.9 99.0 GSM429985 Rice mutant phoenix (pho) panicle rep 2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
11.8 98.3 GSM99870 TCHW P13_agami control, biological rep1 GSE4438 Expression data from rice under salinity stress
10.7 98.1 GSM99864 TCHW P7_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
10.7 98.1 GSM99858 TCHW P1_m103 control, biological rep1 GSE4438 Expression data from rice under salinity stress
10.0 98.0 GSM67056 FL478 salt stressed replicate 2 GSE3053 Rice salt expression
9.9 98.0 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
8.5 97.7 GSM99860 TCHW P3_m103 control, biological rep3 GSE4438 Expression data from rice under salinity stress
8.3 97.7 GSM67058 IR29 control replicate 1 GSE3053 Rice salt expression
7.2 97.4 GSM67054 FL478 control replicate 3 GSE3053 Rice salt expression
7.0 97.4 GSM429983 Rice mutant phoenix (pho) panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 5e-11 69 Os08g0438100 AK107904.1 - The start codon is not identified. 3e-1 At2g23210 UDP-glycosyltransferase/ transferase, transferring glycosyl groups C.G. S.X.
0.14 3e-15 83 Os11g0128300 AK063715.1 - ZF-HD homeobox protein (Fragment) 9e-2 At3g28917 MIF2 (MINI ZINC FINGER 2) C.G. S.X.
0.08 7e-7 56 Os02g0706600 9630.m04651 - ZF-HD homeobox protein Cys/His-rich dimerisationregion domain containing protein 2e-3 At1g69600 ZFHD1 (ZINC FINGER HOMEODOMAIN 1) C.G. S.X.
0.05 8e-16 85 Os05g0579300 AK111350.1 - ZF-HD homeobox protein Cys/His-rich dimerisationregion domain containing protein 4e-2 At1g69600 ZFHD1 (ZINC FINGER HOMEODOMAIN 1) C.G. S.X.
0.05 2e-7 57 Os12g0208900 9640.m01003 - ZF-HD homeobox protein Cys/His-rich dimerisationregion domain containing protein 4e-2 At1g69600 ZFHD1 (ZINC FINGER HOMEODOMAIN 1) C.G. S.X.
0.03 2e-7 57 Os08g0479400 AK109528.1 - ZF-HD homeobox protein 2e-5 At1g14440 AtHB31 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31) C.G. S.X.
0.02 3e-6 54 Os02g0714300 AK107036.1 - AT-rich interaction region domain containingprotein 5e-15 At1g76510 ARID/BRIGHT DNA-binding domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 5e-3 42 Arabidopsis thaliana At3g28917 2745896 MIF2 (MINI ZINC FINGER 2) F:DNA binding;P:biological_process unknown;C:unknown;P - - - C.G. S.X.
0.12 8e-6 52 Glycine max GmaAffx.12946.1.S1_at AW508242 - - 7e-5 At5g60480 AtHB26 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 26) C.G. S.X.
0.12 2e-10 65 Hordeum vulgare Contig11680_at Contig11680 - - 2e-3 At1g74660 MIF1 (MINI ZINC FINGER 1) C.G. S.X.
0.05 1e-1 38 Populus trichocarpa PtpAffx.215377.1.S1_at pmrna29531 hypothetical protein - 2e-4 At3g50890 AtHB28 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 28) C.G. S.X.
0.15 2e-12 73 Triticum aestivum Ta.8632.2.S1_x_at CA662706 - - 5e-6 At1g74660 MIF1 (MINI ZINC FINGER 1) C.G. S.X.
0.06 2e-6 52 Vitis vinifera 1619036_at CF212472 hypothetical protein LOC100246551 - 1e+0 At5g27247 unknown protein C.G. S.X.
0.16 2e-12 71 Zea mays Zm.7906.1.A1_at BM268263 zinc finger homeodomain protein 1 - 6e-3 At3g28917 MIF2 (MINI ZINC FINGER 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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