CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0413300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 91.1 Os09g0413300 9637.m02118 - TPR-like domain containing protein 3e-1 At4g02750 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.60 79.7 Os02g0159400 AK109550.1 - Hypothetical protein 8e-2 At3g46666 unknown protein S.X. H.G.
0.55 73.7 Os02g0456000 AK119496.1 - - 4e-6 At4g01400 - S.X. H.G.
0.44 58.1 Os05g0583200 AK102230.1 - BED finger domain containing protein 4e-1 At5g63740 zinc finger protein-related S.X. H.G.
0.36 44.0 Os07g0555300 AK071161.1 - Hypothetical protein 9e-2 At3g22840 ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN) S.X. H.G.
0.12 7.2 Os08g0153600 9636.m00506 - Protein prenyltransferase domain containingprotein 2e-1 At5g40405 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
36.1 99.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
32.4 99.8 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
31.6 99.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.7 99.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.5 99.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.2 99.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.9 99.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.8 99.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.7 99.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.1 99.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 40 Os07g0260000 CB097056 - Protein prenyltransferase domain containingprotein 2e-5 At4g18840 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 6e-4 48 Os07g0436600 9635.m02444 - Protein prenyltransferase domain containingprotein 8e-1 At2g01510 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 2e-3 46 Os03g0435200 AK120095.1 - TPR-like domain containing protein 2e-3 At4g39952 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 6e-1 38 Os02g0680500 AK106401.1 - Protein prenyltransferase domain containingprotein 3e-3 At5g39350 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 6e-1 38 Os05g0325000 9633.m02338 - - 8e-2 At5g40405 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 38 Arabidopsis thaliana At4g02750 828187 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:mitochondrion;POMFB - - - C.G. S.X.
0.02 3e-2 42 Glycine max GmaAffx.9730.1.S1_at BM188779 - - 2e-1 At1g13410 - C.G. S.X.
0.01 2e+0 34 Hordeum vulgare HVSMEn0019H03r2_at HVSMEn0019H03r2 - - 3e+0 At5g14320 30S ribosomal protein S13, chloroplast (CS13) C.G. S.X.
0.02 7e-3 44 Populus trichocarpa PtpAffx.203873.1.S1_at pmrna7653 hypothetical protein - 5e-3 At3g13770 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 1e+0 36 Triticum aestivum TaAffx.9334.1.S1_at CA602156 - - 1e+0 At3g43630 nodulin, putative C.G. S.X.
0.01 4e-1 36 Vitis vinifera 1619661_at CB001672 - - 1e+0 At4g09030 AGP10 (ARABINOGALACTAN PROTEIN 10) C.G. S.X.
0.01 8e+0 32 Zea mays Zm.6778.1.S1_at AY105006.1 - - 2e-15 At4g27230 HTA2 (histone H2A) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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