CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0408000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 79.7 Os09g0408000 AK059658.1 - Conserved hypothetical protein 2e-11 At3g50590 nucleotide binding S.X. H.G.
0.67 87.2 Os07g0564700 AK059018.1 - Hypothetical protein 5e-18 At3g43300 ATMIN7 (ARABIDOPSIS THALIANA HOPM INTERACTOR 7) S.X. H.G.
0.63 82.7 Os03g0711400 AK100286.1 - Coatomer alpha subunit 4e-79 At1g62020 coatomer protein complex, subunit alpha, putative S.X. H.G.
0.55 73.7 Os01g0653800 AK111531.1 - WD40-like domain containing protein 1e-32 At5g24710 - S.X. H.G.
0.30 32.7 Os03g0265700 AK068453.1 - SH3 domain containing protein 6e-50 At2g07360 SH3 domain-containing protein S.X. H.G.
0.22 19.4 Os12g0104800 AK058259.1 - - 2e-138 At3g08530 clathrin heavy chain, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.2 96.7 GSM159201 Inflorescence (P5, 15 - 22 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
5.0 96.6 GSM429983 Rice mutant phoenix (pho) panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
4.7 96.4 GSM429982 Rice wild-type panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
4.6 96.3 GSM159202 Inflorescence (P5, 15 - 22 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
4.5 96.3 GSM159190 Young inflorescence (P1, upto 3 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
3.9 95.8 GSM99877 TCHW P19_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
3.8 95.7 GSM409428 Nipponbare_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.8 95.7 GSM99878 TCHW P20_ir29 control, biological rep2 GSE4438 Expression data from rice under salinity stress
3.8 95.7 GSM159186 SAM, biological rep 1 GSE6893 Expression data for reproductive development in rice
3.8 95.7 GSM429984 Rice wild-type panicle rep2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e-1 40 Os07g0232800 AY324148.1 - Zinc transporter ZIP family protein 1e-5 At4g19680 IRT2 C.G. S.X.
0.01 1e+0 38 Os06g0652300 BI812416 - 21556- 22494 4e-2 At1g62350 - C.G. S.X.
0.01 2e+0 36 Os02g0528900 AK105293.1 - PDR9 ABC transporter 8e-6 At4g15215 PDR13 C.G. S.X.
0.01 2e+0 36 Os05g0331200 AK100884.1 - External rotenone-insensitive NADPH dehydrogenase 7e-8 At4g05020 NDB2 (NAD(P)H dehydrogenase B2) C.G. S.X.
0.01 2e+0 36 Os11g0302800 AK064557.1 - Protein of unknown function DUF724 family protein 1e+0 At5g53000 TAP46 (2A phosphatase associated protein of 46 kD) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-11 71 Arabidopsis thaliana At3g50590 824223 nucleotide binding F:nucleotide binding;P:biological_process unknown;C:plasma membrane;MBFOPV - - - C.G. S.X.
0.14 1e-6 56 Glycine max GmaAffx.92345.1.S1_s_at CF808070 - - 9e-45 At3g50590 nucleotide binding C.G. S.X.
0.46 4e-146 517 Hordeum vulgare Contig5985_at Contig5985 - - 1e-3 At3g50590 nucleotide binding C.G. S.X.
0.21 1e-22 109 Populus trichocarpa Ptp.6322.2.A1_a_at CV241840 - - 4e-1 At1g61810 BGLU45 (BETA-GLUCOSIDASE 45) C.G. S.X.
0.28 1e-123 444 Triticum aestivum Ta.6698.1.S1_at CK200349 - - 2e-9 At3g50590 nucleotide binding C.G. S.X.
0.09 1e-9 63 Vitis vinifera 1608593_at CB981729 hypothetical protein LOC100254837 - 1e+0 At2g27340 - C.G. S.X.
0.46 0 662 Zea mays Zm.5951.1.A1_at AI665912 - - 3e-14 At3g50590 nucleotide binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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