Gene omics information

Query gene ID Os09g0403000
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.4458.1Os09g0403000AK111051.1-Conserved hypothetical protein1e-1At1g76500SOB3 (SUPPRESSOR OF PHYB-4#3)S.X.H.G.
0.3644.0Os09g0255000AK069080.1-Cell wall invertase (EC 3.2.1.26)4e+0At5g4004060S acidic ribosomal protein P2 (RPP2E)S.X.H.G.
0.3644.0Os03g0149800AK109394.3-Zn-finger, RING domain containing protein6e-1At2g47560zinc finger (C3HC4-type RING finger) family proteinS.X.H.G.
0.3644.0Os03g0854600AK104577.1-Glycoside hydrolase, family 16 domain containingprotein7e-1At3g50820PSBO2 (PHOTOSYSTEM II SUBUNIT O-2)S.X.H.G.
0.2727.5Os03g0626700AK068484.1-Multi antimicrobial extrusion protein MatE familyprotein1e-6At3g21690MATE efflux family proteinS.X.H.G.
0.127.2Os01g0208400AK105750.1-Conserved hypothetical protein2e-2At5g19875unknown proteinS.X.H.G.
0.073.7Os08g0300300AK066375.1-C1C-Nt1 protein1e+0At5g66815unknown proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
11.498.2GSM359924Pokkali root, salt-treated, biological replicate 3GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
10.898.1GSM359911IR29 root, salt-treated, biological replicate 2GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
10.498.1GSM359907FL478 root, salt-treated, biological replicate 3GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
10.098.0GSM359905FL478 root, salt-treated, biological replicate 1GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
8.697.8GSM359908IR29 root, control, biological replicate 1GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
8.297.7GSM359910IR29 root, salt-treated, biological replicate 1GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
7.897.6GSM359922Pokkali root, salt-treated, biological replicate 1GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
7.797.6GSM359906FL478 root, salt-treated, biological replicate 2GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
6.797.3GSM359917IR63731 root, salt-treated, biological replicate 2GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
6.497.2GSM359919Pokkali root, control, biological replicate 1GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.123e-448Os06g02600009634.m01482-Conserved hypothetical protein2e+0At4g19820glycosyl hydrolase family 18 proteinC.G.S.X.
0.049e-446Os06g03418009634.m02303--9e-1At3g23245unknown proteinC.G.S.X.
0.036e-550Os10g0395400CB660512-Glutathione S-transferase, N-terminal domaincontaining protein3e-2At3g10040transcription factorC.G.S.X.
0.032e-448Os01g0566700NM_193573.1--3e-2At1g27710glycine-rich proteinC.G.S.X.
0.039e-446Os01g01997009629.m00976-Conserved hypothetical protein3e-4At1g79770unknown proteinC.G.S.X.
0.029e-446Os03g07457009631.m05238-ATMRK14e-2At3g01490protein kinase, putativeC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e-138Arabidopsis thalianaAt1g76500843983SOB3 (SUPPRESSOR OF PHYB-4#3)Encodes an AT hook domain containing protein. Identified in a screen of activation tagged lines that suppress the long-hypocotyl phenotype of a weak phyB allele. Affects cell elongation in the hypocotyl and leaves.Acts redundantly with ESC to modulate hypocotyl growth inhibition in response to light---C.G.S.X.
0.042e+034Glycine maxPsAffx.psMC007xJ24f_atPsAffx.psMC007xJ24f--7e-1At5g60030unknown proteinC.G.S.X.
0.031e-240Hordeum vulgareContig21706_atContig21706--1e-3At5g44000glutathione S-transferase C-terminal domain-containing proteinC.G.S.X.
0.022e+034Populus trichocarpaPtpAffx.87677.1.S1_atCX182336hypothetical protein-8e-2At4g38470protein kinase family proteinC.G.S.X.
0.082e-1273Triticum aestivumTaAffx.111259.1.S1_atCA644775--3e+0At3g22030receptor-like protein kinase-relatedC.G.S.X.
0.033e-238Vitis vinifera1609442_atCF373210hypothetical protein LOC100243127-3e-4At3g05800transcription factorC.G.S.X.
0.048e-444Zea maysZm.12612.1.A1_atBU050513--6e-1At1g23260MMZ1 (MMS ZWEI HOMOLOGUE 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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