CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0380600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 93.1 Os09g0380600 AK063655.1 - Conserved hypothetical protein 1e+1 At5g67070 RALFL34 (ralf-like 34) S.X. H.G.
0.36 44.0 Os09g0547500 AK062595.1 - Lysine decarboxylase-like protein 5e-1 At2g35990 - S.X. H.G.
0.33 38.8 Os09g0457900 AK067195.1 - AP2 domain containing protein RAP2.6 (Fragment) 5e-1 At3g23230 ethylene-responsive factor, putative S.X. H.G.
0.33 38.8 Os01g0597600 AU056799 - Amino acid/polyamine transporter II family protein 5e+0 At2g35480 unknown protein S.X. H.G.
0.33 38.8 Os03g0315400 BI807304 - MYB-related protein 340 4e+0 At5g27247 unknown protein S.X. H.G.
0.29 31.1 Os09g0341500 AK073913.1 - Cyclin-like F-box domain containing protein 2e-1 At4g25190 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
80.8 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
45.3 99.9 GSM375647 Taichung 65_shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
42.7 99.9 GSM375648 Taichung 65_shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
38.3 99.8 GSM375649 Taichung 65_shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
28.7 99.6 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
21.3 99.2 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
19.4 99.0 GSM375765 gid1-3_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
6.4 97.2 GSM375777 slr1 (k1001)_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
6.2 97.1 GSM375775 slr1 (k1001)_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
5.8 97.0 GSM278849 WuYun3-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 1e-19 99 Os09g0381000 9637.m01836 - - 1e-1 At1g06475 unknown protein C.G. S.X.
0.02 2e-2 42 Os01g0773200 NM_191440.1 - Hypothetical protein 9e-4 At5g19840 transcription factor jumonji (jmjC) domain-containing protein C.G. S.X.
0.02 2e-2 42 Os09g0433000 AK063243.1 - Conserved hypothetical protein 4e+0 At2g42360 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 2e-2 42 Os09g0441100 AK107584.1 - Cytochrome P450 monooxygenase CYP92A1 4e+0 At5g67070 RALFL34 (ralf-like 34) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+1 32 Arabidopsis thaliana At5g67070 836842 RALFL34 (ralf-like 34) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. - - - C.G. S.X.
0.02 9e-1 36 Glycine max PsAffx.CL1050Contig1_at PsAffx.CL1050Contig1 - - 5e+0 At1g53708 RTFL9 (ROTUNDIFOLIA LIKE 9) C.G. S.X.
0.02 7e-2 38 Hordeum vulgare Contig19331_at Contig19331 - - 3e+0 At1g67210 proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein C.G. S.X.
0.02 3e+0 34 Populus trichocarpa PtpAffx.219859.1.S1_at pmrna36013 hypothetical protein - 1e+0 At5g67170 SEC-C motif-containing protein / OTU-like cysteine protease family protein C.G. S.X.
0.03 4e-2 40 Triticum aestivum TaAffx.86185.1.S1_at CA614998 - - 6e-2 At1g04778 unknown protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1613853_s_at CF203997.1 - - 3e-1 At5g54150 unknown protein C.G. S.X.
0.02 2e-2 40 Zea mays Zm.15213.1.A1_at BM331832 - - 3e+0 At5g67070 RALFL34 (ralf-like 34) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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