CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0358400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.6 Os09g0358400 9637.m01632 - - 2e-3 At3g53080 galactose-binding lectin family protein S.X. H.G.
0.44 58.1 Os12g0283400 AK110798.1 - Glutelin family protein 2e+0 At2g23550 MES6 (METHYL ESTERASE 6) S.X. H.G.
0.42 53.9 Os09g0341500 AK073913.1 - Cyclin-like F-box domain containing protein 2e-1 At4g25190 unknown protein S.X. H.G.
0.42 53.9 Os09g0380600 AK063655.1 - Conserved hypothetical protein 1e+1 At5g67070 RALFL34 (ralf-like 34) S.X. H.G.
0.40 51.1 Os01g0714600 AK059855.1 - Conserved hypothetical protein 2e+0 At5g61970 signal recognition particle-related / SRP-related S.X. H.G.
0.31 34.5 Os02g0559800 AB045120.1 - Zn-finger, RING domain containing protein 6e-1 At4g24026 unknown protein S.X. H.G.
0.31 34.5 Os01g0821600 AK108657.1 - DNA-binding WRKY domain containing protein 2e-1 At4g09460 ATMYB6 S.X. H.G.
0.30 32.7 Os08g0404500 AK103556.1 - C1-like domain containing protein 8e+0 At5g15150 ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3) S.X. H.G.
0.29 31.1 Os03g0315400 BI807304 - MYB-related protein 340 4e+0 At5g27247 unknown protein S.X. H.G.
0.26 25.6 Os09g0457900 AK067195.1 - AP2 domain containing protein RAP2.6 (Fragment) 5e-1 At3g23230 ethylene-responsive factor, putative S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
54.2 99.9 GSM154958 Leaf_control_replicate 2 GSE6720 Gene expression in OsRR6-overexpression line
52.1 99.9 GSM154957 Leaf_control_replicate 1 GSE6720 Gene expression in OsRR6-overexpression line
48.4 99.9 GSM375648 Taichung 65_shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
42.3 99.9 GSM375647 Taichung 65_shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
38.3 99.8 GSM375649 Taichung 65_shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
17.7 98.9 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
17.5 98.9 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
17.2 98.8 GSM375765 gid1-3_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
13.3 98.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM154960 Leaf_OsRR6-overexpressor_replicate 2 GSE6720 Gene expression in OsRR6-overexpression line
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 2e-94 347 Os09g0359500 AK100557.1 - Protein kinase domain containing protein 5e-3 At5g48380 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.27 2e-75 284 Os09g0356800 AK120189.1 - Protein kinase domain containing protein 1e-3 At2g19190 FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1) C.G. S.X.
0.25 2e-16 87 Os09g0351700 CB631541 - Protein kinase family protein 4e-2 At5g01020 protein kinase family protein C.G. S.X.
0.15 2e-20 101 Os09g0349600 9637.m01544 - Protein kinase domain containing protein 3e-1 At5g20050 protein kinase family protein C.G. S.X.
0.14 4e-15 83 Os09g0348600 9637.m01534 - Protein kinase domain containing protein 3e-4 At2g30740 serine/threonine protein kinase, putative C.G. S.X.
0.10 5e-8 59 Os09g0349800 9637.m01547 - Protein kinase domain containing protein 1e+0 At5g66710 protein kinase, putative C.G. S.X.
0.08 2e-16 87 Os09g0352000 9637.m01571 - Protein kinase domain containing protein 5e-3 At2g28930 APK1B C.G. S.X.
0.06 4e-52 206 Os04g0531800 AK121355.1 - Hypothetical protein 1e-1 At3g53080 galactose-binding lectin family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-3 44 Arabidopsis thaliana At3g53080 824474 galactose-binding lectin family protein F:sugar binding, beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;POMB - - - C.G. S.X.
0.05 2e-3 44 Glycine max GmaAffx.24353.3.S1_at BG043550 - - 8e-10 At2g28590 protein kinase family protein C.G. S.X.
0.04 3e-3 42 Hordeum vulgare Contig12884_at Contig12884 - - 9e-9 At1g06840 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.04 4e-5 50 Populus trichocarpa Ptp.7119.1.S1_at DN488475 hypothetical protein - 8e-5 At1g07870 protein kinase family protein C.G. S.X.
0.04 4e-1 36 Triticum aestivum TaAffx.94232.1.S1_at CA658145 - - 1e-2 At2g30740 serine/threonine protein kinase, putative C.G. S.X.
0.03 1e-4 46 Vitis vinifera 1608103_at CD801640 hypothetical protein LOC100266523 - 3e-61 At2g47060 serine/threonine protein kinase, putative C.G. S.X.
0.06 4e-2 38 Zea mays Zm.18322.1.A1_at CO527573 hypothetical protein LOC100217265 - 1e+0 At2g47890 zinc finger (B-box type) family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage