CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0347000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.99 100.0 Os09g0347000 9637.m01522 - - 3e-1 At1g54680 unknown protein S.X. H.G.
0.65 83.8 Os07g0688400 9638.m02651 - - 2e+0 At4g19270 unknown protein S.X. H.G.
0.60 79.7 Os01g0604600 AU058134 - Conserved hypothetical protein 3e+0 At3g48675 unknown protein S.X. H.G.
0.57 77.0 Os01g0839000 NM_190518.1 - - 3e-1 At2g26120 glycine-rich protein S.X. H.G.
0.51 68.7 Os03g0279100 9631.m01676 - - 2e+0 At5g57290 60S acidic ribosomal protein P3 (RPP3B) S.X. H.G.
0.50 68.0 Os10g0106300 9638.m00073 - - 1e+1 At4g24050 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.42 53.9 Os09g0116000 9637.m00121 - - 4e+0 At5g64040 PSAN S.X. H.G.
0.40 51.1 Os01g0357000 AK111025.1 - Flavin monoxygenase-like protein floozy 3e-1 At1g63290 ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative S.X. H.G.
0.39 48.3 Os10g0328600 AK109143.1 - - 2e-2 At5g44450 methyltransferase S.X. H.G.
0.36 44.0 Os01g0919100 9633.m03133 - - 2e-1 At3g48880 F-box family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
43.0 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
27.8 99.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.6 99.6 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.8 99.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.8 99.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.0 99.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.8 99.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.4 99.4 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.9 99.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.5 99.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 3e-30 133 Os06g0304600 AK120604.1 - Peptidase aspartic family protein 6e-2 At1g64405 unknown protein C.G. S.X.
0.08 9e-6 52 Os12g0587000 9640.m03875 - - 2e-1 At5g34581 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.07 4e-5 50 Os08g0282200 AK107014.1 - Conserved hypothetical protein 5e+0 At5g57565 protein kinase family protein C.G. S.X.
0.06 2e-9 63 Os11g0218700 9639.m01061 - - 1e-7 At1g27090 glycine-rich protein C.G. S.X.
0.04 1e-4 48 Os01g0609700 AK109629.1 - Conserved hypothetical protein 8e-1 At3g44950 glycine-rich protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 36 Arabidopsis thaliana At1g54680 841909 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO - - - C.G. S.X.
0.04 4e-1 36 Glycine max HgAffx.16354.1.S1_at CB280002 - - 6e-1 At5g53950 CUC2 (CUP-SHAPED COTYLEDON 2) C.G. S.X.
0.05 3e-2 38 Hordeum vulgare Contig10507_at Contig10507 - - 2e+1 At5g10990 auxin-responsive family protein C.G. S.X.
0.03 4e-1 36 Populus trichocarpa PtpAffx.208589.1.S1_at pmrna17046 hypothetical protein - 3e-1 At5g65640 bHLH093 (beta HLH protein 93) C.G. S.X.
0.04 3e-4 46 Triticum aestivum TaAffx.32175.1.S1_at CA599676 - - 2e+1 At5g07230 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.03 3e-1 34 Vitis vinifera 1611981_at CF403805 - - 6e-2 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein C.G. S.X.
0.03 1e-1 36 Zea mays Zm.9061.1.A1_at BM341558 - - 5e+0 At1g50560 CYP705A25 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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