CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0341500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 93.1 Os09g0341500 AK073913.1 - Cyclin-like F-box domain containing protein 2e-1 At4g25190 unknown protein S.X. H.G.
0.52 69.6 Os09g0341600 AK071689.1 - Cyclin-like F-box domain containing protein 2e-1 At1g77855 unknown protein S.X. H.G.
0.50 68.0 Os09g0457900 AK067195.1 - AP2 domain containing protein RAP2.6 (Fragment) 5e-1 At3g23230 ethylene-responsive factor, putative S.X. H.G.
0.49 64.4 Os01g0841700 U95135.1 - RPP17-1 7e-3 At5g27560 unknown protein S.X. H.G.
0.46 60.9 Os12g0150200 AK064287.1 - Cytochrome P450 family protein 6e-2 At3g01900 CYP94B2 S.X. H.G.
0.44 58.1 Os03g0315400 BI807304 - MYB-related protein 340 4e+0 At5g27247 unknown protein S.X. H.G.
0.39 48.3 Os01g0821600 AK108657.1 - DNA-binding WRKY domain containing protein 2e-1 At4g09460 ATMYB6 S.X. H.G.
0.36 44.0 Os05g0552800 9633.m04468 - Conserved hypothetical protein 4e+0 At5g44060 unknown protein S.X. H.G.
0.34 40.0 Os04g0447100 9632.m03516 - Lipoxygenase 2e-5 At1g72520 lipoxygenase, putative S.X. H.G.
0.27 27.5 Os01g0905200 AK067779.1 - Exo70 exocyst complex subunit family protein 3e-1 At1g06250 lipase class 3 family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
30.0 99.7 GSM375649 Taichung 65_shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
27.5 99.6 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
27.1 99.6 GSM375647 Taichung 65_shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
26.6 99.5 GSM174889 H FR13 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
25.7 99.5 GSM375648 Taichung 65_shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
20.2 99.1 GSM174886 F FR13 4 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
16.7 98.8 GSM375765 gid1-3_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
13.9 98.5 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
12.3 98.3 GSM375769 gid2-1_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
12.0 98.3 GSM375773 slr1 (k1001)_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.53 6e-74 280 Os09g0342000 AK111440.1 - Cyclin-like F-box domain containing protein 3e+0 At1g27970 NTF2B (NUCLEAR TRANSPORT FACTOR 2B) C.G. S.X.
0.35 3e-26 121 Os09g0324400 AK108615.1 - Cyclin-like F-box domain containing protein 7e-1 At4g27320 universal stress protein (USP) family protein C.G. S.X.
0.32 2e-31 139 Os09g0324300 AK109691.1 - Cyclin-like F-box domain containing protein 8e-1 At3g58850 PAR2 (PHY RAPIDLY REGULATED 2) C.G. S.X.
0.14 7e-9 63 Os09g0324200 AK109621.1 - Cyclin-like F-box domain containing protein 3e+0 At1g68360 zinc finger protein-related C.G. S.X.
0.03 3e-5 52 Os10g0188000 AK108031.1 - Cyclin-like F-box domain containing protein 3e+0 At3g62690 ATL5 (ATL5) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e-1 38 Arabidopsis thaliana At4g25190 828622 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;OMFBPV - - - C.G. S.X.
0.02 5e-3 44 Glycine max GmaAffx.44482.1.S1_at BE475065 - - 8e-20 At5g42560 abscisic acid-responsive HVA22 family protein C.G. S.X.
0.02 6e-3 42 Hordeum vulgare HZ40A08r_at HZ40A08r - - 4e+0 At5g52965 unknown protein C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.220158.1.S1_at pmrna36512 hypothetical protein - 2e+0 At1g53935 unknown protein C.G. S.X.
0.04 2e-4 48 Triticum aestivum TaAffx.117519.1.S1_at CK210880 - - 1e-1 At4g13195 CLE44 (CLAVATA3/ESR-RELATED 44) C.G. S.X.
0.02 6e-2 38 Vitis vinifera 1617898_at CF605263 hypothetical protein LOC100244372 - 3e-1 At5g49610 F-box family protein C.G. S.X.
0.02 4e-4 46 Zea mays Zm.8619.1.S1_at AY109292.1 flower-specific gamma-thionin - 5e-1 At4g34160 CYCD3 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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