CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0326900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 94.6 Os09g0326900 AK067685.1 - - 7e-36 At1g36730 eukaryotic translation initiation factor 5, putative / eIF-5, putative S.X. H.G.
0.33 38.8 Os05g0349500 AK101703.1 - RanBP1 domain containing protein 7e-2 At4g31440 unknown protein S.X. H.G.
0.31 34.5 Os05g0564200 AK070198.1 - U2 snRNP auxiliary factor, small subunit 2e-22 At1g27650 ATU2AF35A S.X. H.G.
0.27 27.5 Os12g0628500 AK122063.1 - Methionine aminopeptidase-like protein 2e-29 At3g59990 MAP2B (METHIONINE AMINOPEPTIDASE 2B) S.X. H.G.
0.26 25.6 Os03g0791500 9631.m05671 - Synaptobrevin family protein 6e-26 At1g11890 SEC22 S.X. H.G.
0.20 16.5 Os01g0550100 AK066233.1 - Ubiquitin-specific protease 6 5e-21 At1g51710 UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) S.X. H.G.
0.19 15.1 Os03g0209400 AK059829.1 - Got1-like protein family protein 9e-6 At5g01430 Got1-like family protein S.X. H.G.
0.18 13.7 Os11g0296800 AK069908.1 - Conserved hypothetical protein 1e+0 At1g62333 unknown protein S.X. H.G.
0.16 11.3 Os03g0800100 NM_185036.1 - Cactin 1e-22 At1g03910 - S.X. H.G.
0.15 10.3 Os02g0803700 AK103936.1 - 26S protease regulatory subunit 6A homolog(TAT-binding protein homolog 1) (TBP-1) 7e-72 At3g05530 RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.4 96.2 GSM154955 Leaf_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
4.3 96.1 GSM154954 Leaf_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
4.2 96.0 GSM154948 Leaf_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
4.1 96.0 GSM154956 Leaf_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
4.0 95.9 GSM154949 Leaf_tZ-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
3.9 95.8 GSM154950 Leaf_tZ-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
2.9 94.5 GSM159263 Drought stress, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
2.9 94.5 GSM159262 Drought stress, biological rep 1 GSE6901 Expression data for stress treatment in rice seedlings
2.9 94.5 GSM159264 Drought stress, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
2.6 93.8 GSM116398 Seedling_Control_rep2 GSE5167 Rice seedling hormone treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 3e-101 371 Os04g0408900 AK058627.1 - DNA binding protein S1FA family protein 2e-6 At2g37120 DNA-binding S1FA family protein C.G. S.X.
0.07 1e-35 153 Os02g0622200 AK102142.1 - PhosphatidylinositolN-acetylglucosaminyltransferase family protein 2e-4 At2g34980 SETH1 C.G. S.X.
0.06 3e-21 105 Os10g0190000 AK064839.1 - Ubiquitin-conjugating enzyme E2 M (EC 6.3.2.19)(Ubiquitin-protein ligase M) (Ubiquitin carrier proteinM) (Nedd8-conjugating enzyme Ubc12) 4e-19 At2g18600 RUB1-conjugating enzyme, putative C.G. S.X.
0.05 7e-25 117 Os05g0437900 AK059586.1 - Tubby family protein 2e-5 At1g25280 AtTLP10 (TUBBY LIKE PROTEIN 10) C.G. S.X.
0.05 4e-23 111 Os02g0201900 AK072368.1 - Helicase, C-terminal domain containing protein 5e-6 At3g02065 DEAD/DEAH box helicase family protein C.G. S.X.
0.05 4e-23 111 Os07g0246300 AK111786.1 - Sec13p 3e+0 At4g18930 cyclic phosphodiesterase C.G. S.X.
0.04 5e-26 121 Os02g0510000 AK100659.1 - Chaperone protein dnaJ 4e-1 At1g75080 BZR1 (BRASSINAZOLE-RESISTANT 1) C.G. S.X.
0.04 6e-16 87 Os03g0609800 AK065225.1 - NPH3 domain containing protein 3e-5 At4g37590 NPY5 (NAKED PINS IN YUC MUTANTS 5) C.G. S.X.
0.04 6e-16 87 Os07g0232200 AK103406.1 - Cytochrome b5 domain containing protein 4e-8 At5g09680 cytochrome b5 domain-containing protein C.G. S.X.
0.03 2e-12 75 Os05g0498700 AK065975.1 - Gda-1 protein 2e-11 At3g27090 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 5e-40 167 Arabidopsis thaliana At1g36730 840582 eukaryotic translation initiation factor 5, putative / eIF-5, putative F:binding, translation initiation factor activity;P:translational initiation, regulation of translational initiation;C:unknown;OMFBPAV - - - C.G. S.X.
0.18 8e-24 113 Glycine max GmaAffx.75978.3.S1_s_at CA937876 - - 2e-35 At1g36730 eukaryotic translation initiation factor 5, putative / eIF-5, putative C.G. S.X.
0.38 4e-131 468 Hordeum vulgare Contig2883_s_at Contig2883 - - 5e-15 At1g77840 eukaryotic translation initiation factor 5, putative / eIF-5, putative C.G. S.X.
0.23 2e-46 188 Populus trichocarpa PtpAffx.4950.1.S1_at AJ779286 hypothetical protein - 2e-54 At1g36730 eukaryotic translation initiation factor 5, putative / eIF-5, putative C.G. S.X.
0.38 2e-134 480 Triticum aestivum Ta.3372.1.S1_at BJ275823 Translation initiation factor eIF5 - 6e-27 At1g36730 eukaryotic translation initiation factor 5, putative / eIF-5, putative C.G. S.X.
0.27 1e-56 220 Vitis vinifera 1619176_at CF519067 hypothetical protein LOC100262554 - 5e-61 At1g36730 eukaryotic translation initiation factor 5, putative / eIF-5, putative C.G. S.X.
0.39 1e-146 519 Zea mays Zm.97.1.S1_at BM073786 Eukaryotic initiation factor-5 - 1e-24 At1g36730 eukaryotic translation initiation factor 5, putative / eIF-5, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006413 The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.
L GO:0006446 Any process that modulates the frequency, rate or extent of translational initiation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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