CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0326100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os09g0326100 AK120843.1 - Protein kinase domain containing protein 6e-3 At5g65700 BAM1 (BARELY ANY MERISTEM 1) S.X. H.G.
0.67 87.2 Os01g0905400 AK063530.1 - Transcriptional factor B3 family protein 2e-2 At4g14580 CIPK4 (CBL-interacting protein kinase 4) S.X. H.G.
0.57 77.0 Os02g0467300 AK064583.1 - Conserved hypothetical protein 8e-2 At1g60640 unknown protein S.X. H.G.
0.55 73.7 Os01g0971600 AK070366.1 - Sn-glycerol-3-phosphate dehydrogenase (Fragment) 4e-12 At5g40610 glycerol-3-phosphate dehydrogenase (NAD+) / GPDH S.X. H.G.
0.55 73.7 Os12g0571500 AK119942.1 - Hypothetical protein 3e-1 At2g21060 ATGRP2B (GLYCINE-RICH PROTEIN 2B) S.X. H.G.
0.50 68.0 Os12g0250800 CF318760 - Hypothetical protein 4e+0 At5g04390 zinc finger (C2H2 type) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
80.1 99.9 GSM302914 emb6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
72.3 99.9 GSM302915 emb6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
37.4 99.8 GSM195224 Suspension cell GSE7951 Genome-wide gene expression profiling of rice stigma
21.3 99.2 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.0 98.8 GSM195228 Embryo GSE7951 Genome-wide gene expression profiling of rice stigma
13.2 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM195230 5d-seed GSE7951 Genome-wide gene expression profiling of rice stigma
10.9 98.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 4e-18 95 Os08g0376300 AK072348.1 - Protein kinase domain containing protein 4e-7 At3g13065 SRF4 (STRUBBELIG-RECEPTOR FAMILY 4) C.G. S.X.
0.03 1e-5 54 Os07g0107800 AK064359.1 - Phytosulfokine receptor precursor (EC 2.7.1.37)(Phytosulfokine LRR receptor kinase) 2e-6 At5g53890 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.02 2e-7 59 Os03g0773700 AK102670.1 - Receptor-like protein kinase 2 8e-9 At3g49670 BAM2 (BARELY ANY MERISTEM 2) C.G. S.X.
0.02 5e-5 52 Os06g0589800 AK101039.1 - - 2e-6 At3g24240 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.01 5e-8 61 Os02g0277700 AK120092.1 - Leucine-rich repeat, plant specific containingprotein 6e-3 At1g21245 wall-associated kinase-related C.G. S.X.
0.01 2e-7 59 Os01g0816600 NM_191078.1 - Protein kinase domain containing protein 3e-7 At5g49780 ATP binding / kinase/ protein serine/threonine kinase C.G. S.X.
0.01 8e-7 57 Os04g0598900 AK111730.1 - Wall-associated kinase-like protein 3e-4 At1g21210 WAK4 (wall associated kinase 4) C.G. S.X.
0.01 1e-5 54 Os07g0597200 AK120815.1 - Protein kinase domain containing protein 5e-1 At5g65830 leucine-rich repeat family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 6e-3 44 Arabidopsis thaliana At5g65700 836699 BAM1 (BARELY ANY MERISTEM 1) Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs. - - - C.G. S.X.
0.02 1e-7 59 Glycine max Gma.16818.1.S1_x_at AF244889.1 receptor-like protein kinase 2 - 3e-51 At5g65700 BAM1 (BARELY ANY MERISTEM 1) C.G. S.X.
0.05 1e-2 42 Hordeum vulgare Contig13701_at Contig13701 - - 3e-12 At3g49670 BAM2 (BARELY ANY MERISTEM 2) C.G. S.X.
0.04 9e-6 54 Populus trichocarpa PtpAffx.215531.1.S1_at pmrna29784 hypothetical protein - 1e-35 At1g28440 HSL1 (HAESA-Like 1) C.G. S.X.
0.03 7e-3 44 Triticum aestivum TaAffx.120936.1.S1_at BJ307684 - - 1e-25 At5g65700 BAM1 (BARELY ANY MERISTEM 1) C.G. S.X.
0.05 2e-6 54 Vitis vinifera 1607952_at CF372631 hypothetical protein LOC100250523 - 3e-8 At1g28440 HSL1 (HAESA-Like 1) C.G. S.X.
0.02 1e-2 42 Zea mays Zm.11939.1.A1_at CF624620 - - 7e-21 At3g14350 SRF7 (STRUBBELIG-RECEPTOR FAMILY 7) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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