CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0323100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os09g0323100 AK069027.1 - Zn-finger, RING domain containing protein 1e-3 At1g80400 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.83 95.8 Os12g0612100 AK101614.1 - Hypothetical protein 9e-1 At5g38290 peptidyl-tRNA hydrolase family protein S.X. H.G.
0.57 77.0 Os10g0464400 AY332469.1 - Riboflavin kinase / FAD synthetase family protein 3e-22 At4g21470 ATFMN/FHY (riboflavin kinase/FMN hydrolase) S.X. H.G.
0.53 71.3 Os05g0101200 AY262026.1 - Peroxisomal membrane anchor protein (Pex14p)domain containing protein 1e+0 At5g61660 glycine-rich protein S.X. H.G.
0.44 58.1 Os01g0104100 AK072797.1 - The start codon is not identified. 1e-2 At3g54360 protein binding / zinc ion binding S.X. H.G.
0.33 38.8 Os02g0201000 AK064792.1 - Conserved hypothetical protein 7e-2 At5g25360 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.6 96.3 GSM159183 Y Leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
4.5 96.3 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
4.4 96.2 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
3.4 95.2 GSM421706 XOO, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
3.1 94.8 GSM357122 14-day-old seedling, rep 1 GSE14275 Expression data for heat shock in rice seedlings
3.0 94.6 GSM421726 MOCK, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
3.0 94.6 GSM357134 14-day-old seedling, rep 3 GSE14275 Expression data for heat shock in rice seedlings
2.9 94.5 GSM255762 wt collar chip GSE12097 antiOsLIC collar chip
2.9 94.5 GSM207564 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
2.8 94.3 GSM421686 XOC, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-4 50 Os02g0787500 AY224451.1 - The start codon is not identified. 7e-39 At4g32600 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.06 1e-4 50 Os05g0179000 AK071804.1 - Zn-finger, RING domain containing protein 7e-20 At4g32600 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 2e-9 65 Os01g0178700 AK103147.1 - RING finger protein OIP1 8e-11 At4g32600 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 5e-1 38 Os03g0758400 AK111573.1 - Ankyrin repeat containing protein 5e-1 At2g03430 ankyrin repeat family protein C.G. S.X.
0.01 5e-1 38 Os06g0116500 AK068442.1 - Pleckstrin-like domain containing protein 2e-18 At4g19040 EDR2 C.G. S.X.
0.01 5e-1 38 Os09g0498700 AK074021.1 - Hypothetical protein 9e-1 At3g09540 pectate lyase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-3 46 Arabidopsis thaliana At1g80400 844380 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB - - - C.G. S.X.
0.02 4e-1 38 Glycine max Gma.4676.1.A1_at AW309817 - - 9e-7 At1g76990 ACR3 C.G. S.X.
0.34 0 688 Hordeum vulgare Contig17823_at Contig17823 - - 2e+0 At5g52720 metal ion binding C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.5895.1.S1_at CV230287 calcium dependent protein kinase 22 /// calcium dependent protein kinase 3 - 8e-24 At4g23650 CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) C.G. S.X.
0.08 5e-9 63 Triticum aestivum TaAffx.5323.1.S1_at BJ319065 - - 4e-6 At4g32600 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.06 7e-2 38 Vitis vinifera 1613820_at CF513385 hypothetical protein LOC100264554 - 2e-8 At4g32600 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 7e-9 61 Zea mays Zm.5393.1.S1_at CF056132 - - 2e-26 At1g80400 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0016567 The process by which one or more ubiquitin moieties are added to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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