CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0299400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.78 93.4 Os09g0299400 9637.m01005 - Sodium-and chloride-activated ATP-sensitivepotassium channel 3e+0 At2g36026 - S.X. H.G.
0.56 76.3 Os06g0283200 AK073829.1 - Zn-finger-like, PHD finger domain containingprotein 1e+0 At1g08110 lactoylglutathione lyase, putative / glyoxalase I, putative S.X. H.G.
0.54 71.9 Os06g0130000 AK064427.1 - Tobacco mosaic virus helicase domain-bindingprotein (Fragment) 3e-27 At2g45500 ATP binding / nucleoside-triphosphatase/ nucleotide binding S.X. H.G.
0.52 69.6 Os09g0573000 AK073399.1 - TPR-like domain containing protein 1e-3 At4g21065 - S.X. H.G.
0.47 62.3 Os06g0101800 AK064178.1 - No apical meristem (NAM) protein domain containingprotein 5e+0 At5g08790 ATAF2 S.X. H.G.
0.43 55.4 Os01g0912600 AK063179.1 - Conserved hypothetical protein 1e-2 At1g28560 SRD2 (SHOOT REDIFFERENTIATION DEFECTIVE 2) S.X. H.G.
0.43 55.4 Os02g0235000 9630.m01296 - ARP2/3 complex, 21 kDa p21-Arc subunit familyprotein 2e+0 At1g60430 ARPC3 (actin-related protein C3) S.X. H.G.
0.41 52.4 Os02g0221300 AK065896.1 - Eukaryotic initiation factor 4A (eIF4A) (eIF-4A) 7e+0 At5g10300 MES5 (METHYL ESTERASE 5) S.X. H.G.
0.39 48.3 Os09g0383400 AK103385.1 - Helicase, C-terminal domain containing protein 9e-5 At1g59990 DEAD/DEAH box helicase, putative (RH22) S.X. H.G.
0.38 46.9 Os07g0619700 NM_189847.1 - Hypothetical protein 8e-1 At3g30220 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.1 99.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.9 99.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.8 99.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.6 99.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.7 99.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.3 99.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.1 99.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.1 99.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.0 98.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.5 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-2 40 Os03g0159000 9631.m00557 - Proteinase inhibitor I9, subtilisin propeptidedomain containing protein 2e+0 At4g36040 DNAJ heat shock N-terminal domain-containing protein (J11) C.G. S.X.
0.02 9e-2 40 Os06g0185200 AK109116.1 - Hypothetical protein 6e-1 At3g55460 SCL30 C.G. S.X.
0.02 9e-2 40 Os10g0516500 AK059055.1 - Hypothetical protein 7e-4 At5g64905 PROPEP3 (Elicitor peptide 3 precursor) C.G. S.X.
0.01 2e-2 42 Os02g0120200 AK110433.1 - Phospholipase D nu-2 (Fragment) 4e-7 At4g00240 PLDBETA2 C.G. S.X.
0.01 2e-2 42 Os05g0161700 AK110850.1 - Conserved hypothetical protein 2e-1 At1g05990 calcium-binding protein, putative C.G. S.X.
0.01 9e-2 40 Os10g0406300 AK068588.1 - The start codon is not identified. 5e-17 At2g34140 Dof-type zinc finger domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Arabidopsis thaliana At2g36026 6241209 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO - - - C.G. S.X.
0.02 2e-1 38 Glycine max GmaAffx.85640.1.S1_at AW703774 - - 1e+0 At5g57290 60S acidic ribosomal protein P3 (RPP3B) C.G. S.X.
0.03 1e+0 34 Hordeum vulgare Contig17872_at Contig17872 - - 2e+0 At3g24730 catalytic C.G. S.X.
0.06 4e-3 44 Populus trichocarpa PtpAffx.209787.1.S1_at pmrna19306 outward rectifying potassium channel - 5e-14 At4g18160 KCO6 C.G. S.X.
0.04 4e-2 40 Triticum aestivum TaAffx.62632.1.S1_at BQ609318 - - 4e+0 At3g05000 transport protein particle (TRAPP) component Bet3 family protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1620122_at CD720960 - - 3e-1 At4g14716 ATARD1 (ACIREDUCTONE DIOXYGENASE 1) C.G. S.X.
0.02 3e-1 36 Zea mays Zm.9037.1.S1_at BM073535 - - 1e-4 At2g44920 thylakoid lumenal 15 kDa protein, chloroplast C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006813 The directed movement of potassium ions (K+) into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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