CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0275200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.98 100.0 Os09g0275200 AK070953.1 - SKP1 3e-1 At1g73120 unknown protein S.X. H.G.
0.68 87.5 Os02g0651200 9630.m04184 - Conserved hypothetical protein 5e+0 At5g28630 glycine-rich protein S.X. H.G.
0.64 83.4 Os04g0134300 9632.m00375 - - 2e+0 At5g25420 xanthine/uracil permease family protein S.X. H.G.
0.63 82.7 Os08g0248400 AK109903.1 - - 8e-1 At4g18660 unknown protein S.X. H.G.
0.62 81.5 Os02g0126200 9630.m00240 - - 6e-1 At1g54095 unknown protein S.X. H.G.
0.59 78.0 Os09g0567100 AK069269.1 - Hypothetical protein 9e-2 At4g12760 unknown protein S.X. H.G.
0.58 77.0 Os12g0165400 9640.m00608 - Hypothetical protein 1e+0 At1g53480 unknown protein S.X. H.G.
0.57 77.0 Os08g0492200 9636.m03870 - - 4e-2 At2g41260 M17 S.X. H.G.
0.56 76.3 Os01g0201300 9629.m00999 - - 7e+0 At5g09978 PEP7 (ELICITOR PEPTIDE 7 PRECURSOR) S.X. H.G.
0.56 76.3 Os01g0157400 NM_184444.1 - - 1e+0 At3g55880 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
184.3 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.3 99.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.6 99.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.6 98.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 4e-8 59 Os07g0624900 9635.m04329 - SKP1 1e+0 At3g21840 ASK7 (ARABIDOPSIS SKP1-LIKE 7) C.G. S.X.
0.10 1e-5 52 Os07g0144900 9635.m00449 - Skp1 (Fragment) 3e-1 At3g60010 ASK13 (ARABIDOPSIS SKP1-LIKE 13) C.G. S.X.
0.03 3e-3 44 Os01g0558100 AK111021.1 - Glutathione S-transferase TSI-1 (EC 2.5.1.18)(Glutathione S- transferase 1) 8e-3 At5g19090 heavy-metal-associated domain-containing protein C.G. S.X.
0.03 3e-3 44 Os10g0365200 AK106938.1 - Tau class GST protein 4 1e-1 At1g68870 unknown protein C.G. S.X.
0.02 7e-4 46 Os01g0126200 AK121464.1 - Spore coat protein-like protein 7e-2 At1g71040 LPR2 (Low Phosphate Root2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-1 36 Arabidopsis thaliana At1g73120 843643 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:unknown;P - - - C.G. S.X.
0.04 3e-2 40 Glycine max PsAffx.CL344Contig1_at PsAffx.CL344Contig1 - - 2e+0 At5g42190 ASK2 (ARABIDOPSIS SKP1-LIKE 2) C.G. S.X.
0.14 1e-5 50 Hordeum vulgare Contig12342_at Contig12342 - - 7e-6 At1g75950 SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.218007.1.S1_at pmrna33503 - - 4e-2 At3g23810 SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2) C.G. S.X.
0.16 2e-5 50 Triticum aestivum Ta.25958.1.A1_at CD454802 - - 3e-4 At3g21840 ASK7 (ARABIDOPSIS SKP1-LIKE 7) C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1612468_at CA815164 hypothetical protein LOC100255261 - 2e-8 At1g70210 CYCD1 C.G. S.X.
0.03 2e-4 46 Zea mays Zm.4603.1.S1_at CK827754 - - 4e-3 At1g75950 SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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