Gene omics information

Query gene ID	Os09g0255000
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	89.6	Os09g0255000	AK069080.1	-	Cell wall invertase (EC 3.2.1.26)	4e+0	At5g40040	60S acidic ribosomal protein P2 (RPP2E)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.56	76.3	Os07g0557200	AK101098.1	-	Delayed-early response protein/equilibrativenucleoside transporter family protein	8e-5	At4g05120	FUR1 (FUDR RESISTANT 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	Os09g0461700	AK066139.1	-	Esterase/lipase/thioesterase domain containingprotein	2e-1	At5g16080	AtCXE17 (Arabidopsis thaliana carboxyesterase 17)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.35	41.7	Os03g0854600	AK104577.1	-	Glycoside hydrolase, family 16 domain containingprotein	7e-1	At3g50820	PSBO2 (PHOTOSYSTEM II SUBUNIT O-2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.33	38.8	Os06g0534800	AK120650.1	-	Ankyrin repeat containing protein	3e+0	At5g23100	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.25	24.1	Os09g0403000	AK111051.1	-	Conserved hypothetical protein	1e-1	At1g76500	SOB3 (SUPPRESSOR OF PHYB-4#3)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.4	98.9	GSM359906	FL478 root, salt-treated, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
13.8	98.5	GSM359917	IR63731 root, salt-treated, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
12.9	98.4	GSM359905	FL478 root, salt-treated, biological replicate 1	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
12.6	98.4	GSM359916	IR63731 root, salt-treated, biological replicate 1	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
11.8	98.3	GSM359914	IR63731 root, control, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
11.1	98.2	GSM359907	FL478 root, salt-treated, biological replicate 3	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
10.2	98.0	GSM359923	Pokkali root, salt-treated, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
10.2	98.0	GSM359918	IR63731 root, salt-treated, biological replicate 3	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
9.9	98.0	GSM359924	Pokkali root, salt-treated, biological replicate 3	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
9.9	98.0	GSM359913	IR63731 root, control, biological replicate 1	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.62	0	1661	Os09g0255300	AK108794.1	-	Glycoside hydrolase, family 32 protein	2e+0	At5g46390	peptidase S41 family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	1e-91	339	Os04g0664900	9632.m05552	-	Cell wall invertase (EC 3.2.1.26)	8e-1	At3g13784	AtcwINV5 (Arabidopsis thaliana cell wall invertase 5)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.51	2e-93	345	Os04g0664800	9632.m05551	-	Cell wall invertase (EC 3.2.1.26)	6e-2	At5g26330	plastocyanin-like domain-containing protein / mavicyanin, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.12	2e-12	75	Os04g0413200	AK120779.1	-	Cell wall invertase 2	2e-8	At3g52600	AtcwINV2 (Arabidopsis thaliana cell wall invertase 2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	6e-10	67	Os01g0966700	AB154521.1	-	Beta-fructofuranosidase (EC 3.2.1.26) (Fragment)	7e-2	At3g24860	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.05	2e-6	56	Os04g0413500	AK072276.1	-	Cell wall invertase 2	3e-4	At3g13790	ATBFRUCT1	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	2e-1	36	Os06g0311900	9634.m02014	-	-	3e+0	At5g53880	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	2e-1	36	Os09g0130000	9637.m00269	-	-	6e+0	At5g44570	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e-1	36	Os02g0689200	AK065336.1	-	Protein of unknown function DUF250 domaincontaining protein	3e-2	At1g44750	ATPUP11	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	4e+0	34	Arabidopsis thaliana	At5g40040	834001	60S acidic ribosomal protein P2 (RPP2E)	F:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome;MPFOAB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e-1	40	Glycine max	PsAffx.C78000080_at	PsAffx.C78000080	-	-	7e-2	At3g48020	-	C.G.	S.X.	Please select
0.44	4e-45	182	Hordeum vulgare	Contig4470_s_at	Contig4470	-	-	3e-1	At1g12240	ATBETAFRUCT4	C.G.	S.X.	Please select
0.05	2e-3	46	Populus trichocarpa	PtpAffx.163561.1.S1_at	BU879414	hypothetical protein	-	3e-23	At3g52600	AtcwINV2 (Arabidopsis thaliana cell wall invertase 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.50	1e-40	169	Triticum aestivum	Ta.5539.1.S1_at	AY162186.1	-	-	5e+0	At3g52600	AtcwINV2 (Arabidopsis thaliana cell wall invertase 2)	C.G.	S.X.	Please select
0.01	5e+0	32	Vitis vinifera	1620944_at	CF373593	hypothetical protein LOC100254978	-	1e+0	At5g49260	unknown protein	C.G.	S.X.	Please select
0.43	5e-75	282	Zea mays	Zm.13430.1.S1_at	AY110858.1	invertase cell wall4	-	2e-5	At3g52600	AtcwINV2 (Arabidopsis thaliana cell wall invertase 2)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage