Gene omics information

Query gene ID	Os09g0252000
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	76.3	Os09g0252000	BI801996	-	Exonuclease RRP41	1e+0	At3g61620	RRP41	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	71.3	Os08g0154700	CF324539	-	Small nuclear ribonucleoprotein (Sm protein)family protein	9e-24	At1g03330	small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.33	38.8	Os03g0699400	AK069110.1	-	N-acetyltransferase 5 (EC 2.3.1.-)	3e-27	At1g03150	GCN5-related N-acetyltransferase (GNAT) family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.29	31.1	Os01g0264800	AK059509.1	-	Breast carcinoma amplified sequence 2 familyprotein	2e-1	At5g53680	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.21	17.9	Os12g0540900	AK102417.1	-	Tryptophanyl-tRNA synthetase (EC 6.1.1.2)(Tryptophan--tRNA ligase) (TrpRS)	3e-19	At3g04600	tRNA synthetase class I (W and Y) family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.09	4.9	Os03g0174100	CR293263	-	RNA Binding Protein 45	1e+0	At3g02700	NC domain-containing protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.8	98.1	GSM195224	Suspension cell	GSE7951	Genome-wide gene expression profiling of rice stigma
7.3	97.5	GSM195230	5d-seed	GSE7951	Genome-wide gene expression profiling of rice stigma
6.9	97.3	GSM302917	endo6D_rep2	GSE11966	Expression data from rice embryo,endosperm,root,leaf and seedling
6.6	97.3	GSM159186	SAM, biological rep 1	GSE6893	Expression data for reproductive development in rice
5.9	97.0	GSM409428	Nipponbare_young panicle 2cm, biological rep4	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.9	97.0	GSM302915	emb6D_rep2	GSE11966	Expression data from rice embryo,endosperm,root,leaf and seedling
5.7	96.9	GSM409427	Nipponbare_young panicle 2cm, biological rep3	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.6	96.9	GSM409432	9311_young panicle 2cm, biological rep3	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.3	96.7	GSM409422	Nipponbare_young panicle 2cm, biological rep2	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.1	96.6	GSM409421	Nipponbare_young panicle 2cm, biological rep1	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	38	Os08g0191700	AK066092.1	-	Glyoxalase I family protein	2e-13	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	2e-1	38	Os02g0550700	AK071257.1	-	Nucleolar autoantigen-like protein	3e-6	At3g60500	CER7 (ECERIFERUM 7)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	2e-1	38	Os05g0203800	AK111723.1	-	MADS box protein	4e-20	At3g58780	SHP1 (SHATTERPROOF 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1e+0	36	Os01g0208800	AK109734.1	-	Conserved hypothetical protein	4e-12	At2g42600	ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	8e+0	32	Os02g0287800	9630.m01763	-	-	1e-1	At1g31370	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	5e-1	36	Os07g0596600	AK067238.1	-	Protein kinase domain containing protein	7e-9	At1g74330	ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e+0	36	Os01g0208700	AK066635.1	-	Phosphoenolpyruvate-carboxylase (Fragment)	8e-12	At2g42600	ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e+0	36	Os03g0672900	9631.m04567	-	RXF12 protein (Xylan endohydrolase) (F19C14.2protein)	8e-8	At4g08160	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e+0	34	Os03g0235900	AF140606.1	-	Nitrate transporter	1e-3	At2g02040	PTR2 (PEPTIDE TRANSPORTER 2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.00	2e+0	34	Os01g0106700	NM_183488.1	-	Phosphatidylinositol 3- and 4-kinase domaincontaining protein	2e-1	At3g48190	ATM (ATAXIA-TELANGIECTASIA MUTATED)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e+0	34	Arabidopsis thaliana	At3g61620	825335	RRP41	exonuclease RRP41 (RRP41)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	2e-2	40	Glycine max	Gma.8360.1.A1_at	BE657697	-	-	2e-21	At3g61620	RRP41	C.G.	S.X.	Please select
0.32	6e-47	186	Hordeum vulgare	Contig13843_at	Contig13843	-	-	2e-12	At3g61620	RRP41	C.G.	S.X.	Please select
0.03	4e-1	36	Populus trichocarpa	PtpAffx.213082.1.S1_at	pmrna25601	hypothetical protein	-	5e-4	At1g28560	SRD2 (SHOOT REDIFFERENTIATION DEFECTIVE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.42	1e-52	206	Triticum aestivum	Ta.9703.1.A1_a_at	AJ610027	-	-	9e-8	At3g61620	RRP41	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1608418_at	CB979002	-	-	5e+0	At5g50820	anac097 (Arabidopsis NAC domain containing protein 97)	C.G.	S.X.	Please select
0.28	9e-52	202	Zea mays	Zm.14301.1.S1_at	AI712237	hypothetical protein LOC100192964	-	2e-22	At3g61620	RRP41	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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