CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0249900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.7 Os09g0249900 AK099860.1 - Ferredoxin-thioredoxin reductase (Fragment) 2e-18 At2g04700 ferredoxin thioredoxin reductase catalytic beta chain family protein S.X. H.G.
0.80 94.6 Os06g0146300 AK101052.1 - Conserved hypothetical protein 6e-2 At5g27560 unknown protein S.X. H.G.
0.80 94.6 Os08g0562100 AK105935.1 - Sorghum chloroplast CM3 malate dehydrogenase(NADP) (Fragment) 7e-20 At5g58330 malate dehydrogenase (NADP), chloroplast, putative S.X. H.G.
0.67 87.2 Os01g0151200 AK110801.1 - Inner membrane protein ALBINO3, chloroplastprecursor. Splice isoform 2 1e-37 At2g28800 ALB3 (ALBINO 3) S.X. H.G.
0.67 87.2 Os05g0571400 AK062369.1 - Conserved hypothetical protein 4e-4 At1g64355 unknown protein S.X. H.G.
0.50 68.0 Os02g0643500 AK068423.1 - Pentapeptide repeat containing protein 6e-13 At1g12250 thylakoid lumenal protein-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.4 97.2 GSM207563 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
6.2 97.1 GSM207558 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
6.0 97.0 GSM207565 Mudanjiang8 wild type control rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
6.0 97.0 GSM207564 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.3 96.7 GSM278851 KT95-418-RSV infected,biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
5.3 96.7 GSM207560 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.3 96.7 GSM207559 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.2 96.7 GSM207562 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
4.9 96.5 GSM207566 Mudanjiang8 wild type control rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
4.7 96.4 GSM278844 WuYun3-RSV infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-2 40 Os11g0453900 AK109096.1 - Dehydrin RAB 16D 3e-2 At2g21490 LEA (DEHYDRIN LEA) C.G. S.X.
0.02 2e-1 38 Os01g0612000 AK111502.1 - DNA methyltransferase PMT1-like protein 6e-5 At5g25480 DNMT2 (DNA METHYLTRANSFERASE-2) C.G. S.X.
0.02 2e-1 38 Os11g0454000 U60097.2 - Dehydrin family protein 1e-7 At5g66400 RAB18 (RESPONSIVE TO ABA 18) C.G. S.X.
0.02 2e-1 38 Os12g0119800 AK059980.1 - Harpin-induced 1 domain containing protein 4e-2 At4g33660 unknown protein C.G. S.X.
0.02 9e-1 36 Os05g0184000 9633.m00823 - Hypothetical protein 1e-1 At3g45910 unknown protein C.G. S.X.
0.02 9e-1 36 Os11g0120100 AK060359.1 - Harpin-induced 1 domain containing protein 4e-2 At1g18680 HNH endonuclease domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 2e-18 93 Arabidopsis thaliana At2g04700 815013 ferredoxin thioredoxin reductase catalytic beta chain family protein F:ferredoxin:thioredoxin reductase activity, ferredoxin reductase activity;P:unknown;C:chloroplast;BOPA - - - C.G. S.X.
0.14 6e-32 139 Glycine max Gma.2131.1.S1_at Y15076.1 ferredoxin thioredoxin reductase precursor - 1e-50 At2g04700 ferredoxin thioredoxin reductase catalytic beta chain family protein C.G. S.X.
0.31 3e-68 258 Hordeum vulgare Contig2379_s_at Contig2379 - - 2e-8 At2g04700 ferredoxin thioredoxin reductase catalytic beta chain family protein C.G. S.X.
0.16 8e-22 105 Populus trichocarpa Ptp.2781.3.A1_a_at CV267908 hypothetical protein - 4e-37 At2g04700 ferredoxin thioredoxin reductase catalytic beta chain family protein C.G. S.X.
0.32 9e-52 204 Triticum aestivum TaAffx.89616.1.S1_at CA610085 - - 2e-4 At2g04700 ferredoxin thioredoxin reductase catalytic beta chain family protein C.G. S.X.
0.12 4e-26 117 Vitis vinifera 1619840_at CA818328 hypothetical protein LOC100245804 - 1e-54 At2g04700 ferredoxin thioredoxin reductase catalytic beta chain family protein C.G. S.X.
0.20 3e-65 248 Zea mays Zm.101.2.S1_a_at AY105599.1 ferredoxin-thioredoxin1 - 2e-6 At2g04700 ferredoxin thioredoxin reductase catalytic beta chain family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0022900 A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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