CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0248000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os09g0248000 AK120327.1 - Conserved hypothetical protein 1e-7 At2g03800 GEK1 (GEKO1) S.X. H.G.
0.83 95.8 Os04g0278900 AK108886.1 - Dihydrouridine synthase, DuS family protein 2e-3 At3g63510 FAD binding / catalytic/ tRNA dihydrouridine synthase S.X. H.G.
0.67 87.2 Os01g0704700 NM_191637.1 - Chloride channel protein CLC-e (AtCLC-e) 4e-3 At4g35440 CLC-E (CHLORIDE CHANNEL E) S.X. H.G.
0.67 87.2 Os01g0715000 AK120627.1 - The start codon is not identified. 6e-8 At5g20220 zinc knuckle (CCHC-type) family protein S.X. H.G.
0.55 73.7 Os01g0960300 BI813093 - Glucose inhibited division protein A 7e+0 At5g57510 unknown protein S.X. H.G.
0.40 51.1 Os12g0193100 AK068584.1 - Subtilisin inhibitor I (ASI-I) [Contains:Subtilisin inhibitor II (ASI-II)] 6e-1 At3g61840 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.3 98.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.2 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM207567 Mudanjiang8 wild type control rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
7.9 97.6 GSM207565 Mudanjiang8 wild type control rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
7.7 97.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-53 212 Os03g0777600 AK068624.1 - Conserved hypothetical protein 2e-1 At3g50845 - C.G. S.X.
0.07 3e-46 188 Os07g0218600 AK072811.1 - Hypothetical protein 4e+0 At5g35470 unknown protein C.G. S.X.
0.06 7e-66 254 Os03g0363500 AK062124.1 - Sugar transporter-like protein 5e-10 At5g18840 sugar transporter, putative C.G. S.X.
0.06 3e-49 198 Os12g0263900 AK065951.1 - Hypothetical protein 2e-6 At1g32100 PRR1 (PINORESINOL REDUCTASE 1) C.G. S.X.
0.05 2e-69 266 Os06g0218500 AK100667.1 - MCM family protein 1e-56 At2g14050 MCM9 C.G. S.X.
0.05 2e-69 266 Os06g0218600 AK072802.1 - Plastocyanin-like domain containing protein 8e-6 At1g72230 plastocyanin-like domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-7 59 Arabidopsis thaliana At2g03800 814906 GEK1 (GEKO1) encodes a D-aminoacyl-tRNA deacylase. Involved in detoxification of D-aminoacyl-tRNA. Mutants also show ethanol-hypersensitive phenotype. - - - C.G. S.X.
0.03 9e-9 63 Glycine max Gma.7220.1.A1_s_at AI495461 - - 5e-3 At2g03800 GEK1 (GEKO1) C.G. S.X.
0.35 2e-152 539 Hordeum vulgare Contig8018_at Contig8018 - - 2e-4 At2g03800 GEK1 (GEKO1) C.G. S.X.
0.02 6e-4 48 Populus trichocarpa PtpAffx.95571.1.A1_at CV242199 hypothetical protein - 6e-3 At2g03800 GEK1 (GEKO1) C.G. S.X.
0.27 4e-155 549 Triticum aestivum TaAffx.90052.1.S1_at BE216939 - - 3e-5 At2g03800 GEK1 (GEKO1) C.G. S.X.
0.01 1e-1 38 Vitis vinifera 1620661_at CB970699 hypothetical protein LOC100251688 - 1e-1 At5g39760 AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23) C.G. S.X.
0.38 1e-122 440 Zea mays Zm.6401.2.S1_a_at BG266177 hypothetical protein LOC100193788 - 1e-5 At2g03800 GEK1 (GEKO1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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