CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0133600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.44 58.1 Os09g0133600 AK104742.1 - Fibrillin-like protein 1e-4 At4g04020 FIB (FIBRILLIN) S.X. H.G.
0.80 94.6 Os06g0724400 AK099961.1 - DNL zinc finger domain containing protein 2e+0 At5g27280 zinc finger (DNL type) family protein S.X. H.G.
0.78 93.4 Os03g0711100 CB670993 - CONSTANS-like protein 1e+0 At4g25990 CIL S.X. H.G.
0.63 82.7 Os03g0583800 AK064786.1 - Mpv17/PMP22 family protein 1e-8 At1g52870 peroxisomal membrane protein-related S.X. H.G.
0.53 71.3 Os04g0493000 AB001883.1 - Zn-finger, CONSTANS type domain containing protein 2e-6 At1g06040 STO (SALT TOLERANCE) S.X. H.G.
0.52 69.6 Os03g0805600 CB661394 - Rieske [2Fe-2S] region domain containing protein 1e-6 At4g25650 ACD1-LIKE (ACD1-LIKE) S.X. H.G.
0.44 58.1 Os03g0731900 AK064873.1 - Isopentenyl/dimethylallyl diphosphate synthase(Fragment) 8e-23 At4g34350 HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE) S.X. H.G.
0.44 58.1 Os03g0198300 AK099437.1 - Heat shock protein DnaJ, N-terminal domaincontaining protein 5e-3 At1g21660 heat shock protein binding S.X. H.G.
0.44 58.1 Os02g0506600 CB679096 - Conserved hypothetical protein 4e-1 At5g59000 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.7 96.9 GSM159181 Mature leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
5.6 96.9 GSM159180 Mature leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
4.9 96.5 GSM421724 MOCK, 96 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.5 96.3 GSM421705 XOO, 96 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.4 96.2 GSM159182 Mature leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
4.4 96.2 GSM421706 XOO, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.4 96.2 GSM174886 F FR13 4 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
4.2 96.0 GSM421725 MOCK, 96 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.2 96.0 GSM375649 Taichung 65_shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
4.2 96.0 GSM154945 Leaf_DMSO-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e-1 38 Os09g0106700 AK066141.1 - Myb proto-oncogene protein (C-myb). Splice isoform3 1e-5 At5g67300 MYBR1 (MYB DOMAIN PROTEIN R1) C.G. S.X.
0.01 9e-1 36 Os03g0214400 AK067931.1 - Conserved hypothetical protein 4e-6 At4g00550 DGD2 C.G. S.X.
0.01 9e-1 36 Os10g0507800 AK061575.1 - Heat shock protein DnaJ, N-terminal domaincontaining protein 5e-9 At2g35720 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.01 4e+0 34 Os06g0237200 AB099525.1 - DNA polymerase lambda 1e-15 At1g10520 DNA polymerase lambda (POLL) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-4 48 Arabidopsis thaliana At4g04020 825714 FIB (FIBRILLIN) Fibrillin precursor protein. The fibrillin preprotein, but not the mature protein interacts with ABI2. Regulated by abscisic acid response regulators. Involved in abscisic acid-mediated photoprotection. - - - C.G. S.X.
0.06 3e-15 83 Glycine max Gma.4315.1.S1_at BM886786 - - 3e-15 At4g22240 plastid-lipid associated protein PAP, putative C.G. S.X.
0.55 1e-147 521 Hordeum vulgare Contig12091_at Contig12091 - - 8e-3 At4g04020 FIB (FIBRILLIN) C.G. S.X.
0.06 3e-15 83 Populus trichocarpa Ptp.6244.1.S1_at DN487419 - - 4e-5 At4g04020 FIB (FIBRILLIN) C.G. S.X.
0.41 2e-50 200 Triticum aestivum Ta.22817.4.S1_at BG905908 - - 7e+0 At4g04020 FIB (FIBRILLIN) C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1621521_at CF518960 hypothetical protein LOC100245475 /// hypothetical protein LOC100252913 /// hypothetical protein LOC100253882 - 4e+0 At4g14110 COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9) C.G. S.X.
0.45 6e-94 343 Zea mays Zm.6518.1.S1_at AW927338 plastid-lipid-associated protein 2 - 2e-4 At4g04020 FIB (FIBRILLIN) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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