CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0129600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os09g0129600 9637.m00266 - Site-specific recombinase family protein 9e-1 At2g46610 arginine/serine-rich splicing factor, putative S.X. H.G.
0.73 91.1 Os02g0649900 9630.m04172 - Iron-phytosiderophore transporter protein yellowstripe 1 2e-5 At5g24380 YSL2 (YELLOW STRIPE LIKE 2) S.X. H.G.
0.50 68.0 Os03g0751100 BU673383 - - 5e-28 At4g16370 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) S.X. H.G.
0.46 60.9 Os07g0258400 AK103557.1 - Metal transporter Nramp6 (AtNramp6) 2e-8 At1g80830 NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1) S.X. H.G.
0.44 58.1 Os01g0871600 AK103248.1 - TGF-beta receptor, type I/II extracellular regionfamily protein 2e-1 At5g07730 unknown protein S.X. H.G.
0.43 55.4 Os03g0379300 AK068704.1 - - 1e-1 At4g26940 galactosyltransferase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
39.5 99.9 GSM116402 Seedling_BAP treated_rep2 GSE5167 Rice seedling hormone treatment
28.1 99.6 GSM116398 Seedling_Control_rep2 GSE5167 Rice seedling hormone treatment
26.9 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
26.6 99.5 GSM116400 Seedling_IAA treated_rep2 GSE5167 Rice seedling hormone treatment
26.0 99.5 GSM116195 Seedling_Control_rep1 GSE5167 Rice seedling hormone treatment
25.0 99.5 GSM116399 Seedling_IAA treated_rep1 GSE5167 Rice seedling hormone treatment
23.1 99.3 GSM116401 Seedling_BAP treated_rep1 GSE5167 Rice seedling hormone treatment
20.2 99.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.7 98.9 GSM359904 FL478 root, control, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
16.0 98.7 GSM359912 IR29 root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-1 36 Os03g0385400 AK068223.1 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 7e+0 At1g60250 zinc finger (B-box type) family protein C.G. S.X.
0.02 1e-1 38 Os03g0681800 9631.m04651 - Protein phosphatase 2A, regulatory B subunit, B56domain containing protein 4e-18 At3g09880 ATB' BETA C.G. S.X.
0.02 4e-1 36 Os08g0451800 AK110908.1 - Zn-finger, cysteine-rich C6HC domain containingprotein 2e+0 At3g45480 zinc ion binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 9e-1 34 Arabidopsis thaliana At2g46610 819273 arginine/serine-rich splicing factor, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBVA - - - C.G. S.X.
0.04 3e-1 36 Glycine max HgAffx.10913.1.S1_at CB935541 - - 4e-3 At1g73000 - C.G. S.X.
0.05 4e-1 34 Hordeum vulgare HV10P15u_at HV10P15u - - 3e+0 At2g28725 unknown protein C.G. S.X.
0.04 8e-2 38 Populus trichocarpa PtpAffx.205038.1.S1_at pmrna9976 hypothetical protein - 5e-3 At5g42780 AtHB27 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 27) C.G. S.X.
0.05 6e-2 38 Triticum aestivum Ta.16417.1.S1_at CA606015 - - 1e+1 At5g42900 unknown protein C.G. S.X.
0.04 3e-1 34 Vitis vinifera 1620638_at CB339545 - - 2e-1 At5g61100 - C.G. S.X.
0.19 4e-10 63 Zea mays Zm.8748.1.A1_at BM340490 hypothetical protein LOC100275684 - 2e+0 At4g34590 GBF6 (G-BOX BINDING FACTOR 6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006310 Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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