CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0117301

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 91.1 Os09g0117301 9637.m00131 - - 2e+0 At2g22460 unknown protein S.X. H.G.
0.67 87.2 Os10g0463600 NM_196898.1 - RNA-directed DNA polymerase (Reversetranscriptase) domain containing protein 1e+0 At4g08025 unknown protein S.X. H.G.
0.67 87.2 Os11g0138225 9639.m00338 - - 1e+1 At5g16980 NADP-dependent oxidoreductase, putative S.X. H.G.
0.67 87.2 Os01g0367800 NM_193806.1 - - 3e-1 At5g09310 unknown protein S.X. H.G.
0.57 77.0 Os03g0601400 9631.m03890 - - 5e+0 At5g06470 glutaredoxin family protein S.X. H.G.
0.44 58.1 Os08g0505600 9636.m03993 - - 7e-1 At5g58890 AGL82 (AGAMOUS-LIKE 82) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
36.2 99.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.8 99.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.1 99.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.2 99.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.5 99.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.9 99.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.0 99.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.4 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.9 99.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.5 99.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 8e-5 48 Os08g0280100 AK119420.1 - Phytase 4e-13 At4g13700 PAP23 (PURPLE ACID PHOSPHATASE 23) C.G. S.X.
0.03 1e+0 34 Os06g0103700 AK070147.1 - Glutamine cyclotransferase family protein 6e-1 At4g25720 QC (GLUTAMINYL CYCLASE) C.G. S.X.
0.02 1e+0 34 Os02g0774800 AK072678.1 - Conserved hypothetical protein 8e-1 At4g16750 DRE-binding transcription factor, putative C.G. S.X.
0.02 1e+0 34 Os09g0385900 AK072555.1 - Conserved hypothetical protein 7e-1 At3g09700 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.01 3e-1 36 Os06g0472300 AK100558.1 - TPR-like domain containing protein 4e-13 At2g03880 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 1e+0 34 Os08g0215300 AK121156.1 - Hypothetical protein 2e+0 At3g59370 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 32 Arabidopsis thaliana At2g22460 816778 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.04 3e+0 32 Glycine max PsAffx.psHA007iH07r_s_at PsAffx.psHA007iH07r - - 2e+1 At5g40700 unknown protein C.G. S.X.
0.05 5e-3 40 Hordeum vulgare HS03G06u_at HS03G06u - - 4e+0 At2g15170 - C.G. S.X.
0.05 3e+0 32 Populus trichocarpa PtpAffx.220110.1.S1_at pmrna36436 hypothetical protein - 2e-1 At4g19130 DNA binding / nucleic acid binding / zinc ion binding C.G. S.X.
0.06 3e+0 32 Triticum aestivum TaAffx.51318.1.S1_at CA727544 - - 2e-5 At4g38620 MYB4 C.G. S.X.
0.04 7e-1 32 Vitis vinifera 1622291_at CF518951 hypothetical protein LOC100266558 - 2e-1 At2g31670 - C.G. S.X.
0.05 7e-2 36 Zea mays Zm.9599.1.A1_at BM333574 - - 2e-1 At1g27330 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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