CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0107400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.6 Os09g0107400 9637.m00042 - - 2e+0 At3g03460 unknown protein S.X. H.G.
0.72 89.8 Os03g0403900 9631.m02829 - - 7e-1 At2g01300 unknown protein S.X. H.G.
0.70 88.4 Os11g0172900 9639.m00656 - - 1e-1 At4g21230 protein kinase family protein S.X. H.G.
0.65 83.8 Os01g0626601 9629.m04206 - - 8e-2 At3g44140 unknown protein S.X. H.G.
0.56 76.3 Os02g0196200 9630.m00943 - - 5e-1 At4g25490 CBF1 (C-REPEAT/DRE BINDING FACTOR 1) S.X. H.G.
0.54 71.9 Os02g0451400 9630.m02380 - - 5e-2 At3g46380 unknown protein S.X. H.G.
0.51 68.7 Os05g0293500 AK072592.1 - Probable pectate lyase 18 precursor (EC 4.2.2.2)(Pectate lyase A10) 3e-3 At4g24780 pectate lyase family protein S.X. H.G.
0.51 68.7 Os06g0542800 9634.m03318 - - 8e-3 At4g34560 unknown protein S.X. H.G.
0.51 68.7 Os03g0406300 9631.m02853 - - 1e-1 At1g72490 unknown protein S.X. H.G.
0.50 68.0 Os07g0144800 9635.m00451 - - 1e+0 At1g75950 SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
80.9 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
37.8 99.8 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
35.3 99.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
31.0 99.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.6 99.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.3 99.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.6 99.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.7 99.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.9 99.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.7 98.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 1e-3 44 Os11g0597300 9639.m03487 - - 2e+0 At5g46720 - C.G. S.X.
0.06 1e+0 34 Os09g0132801 9637.m00316 - - 5e-1 At2g31945 unknown protein C.G. S.X.
0.03 1e+0 34 Os04g0168000 AK109174.1 - Conserved hypothetical protein 2e+0 At5g07110 PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6) C.G. S.X.
0.02 1e+0 34 Os06g0107600 AK100838.1 - Conserved hypothetical protein 1e+1 At5g56369 - C.G. S.X.
0.01 3e-1 36 Os06g0269300 AK122070.1 - Soluble quinoprotein glucose dehydrogenase domaincontaining protein 3e-13 At1g23880 NHL repeat-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 32 Arabidopsis thaliana At3g03460 821252 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV - - - C.G. S.X.
0.04 3e+0 32 Glycine max HgAffx.15145.3.S1_at CK349580 - - 8e-1 At1g61660 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.04 5e+0 30 Hordeum vulgare Contig19960_s_at Contig19960 ENOD40-like protein - 2e-1 At1g75980 - C.G. S.X.
0.05 3e+0 32 Populus trichocarpa PtpAffx.222614.1.S1_at pmrna40152 hypothetical protein - 3e+0 At4g00305 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 6e-1 34 Triticum aestivum TaAffx.6331.1.S1_at CA687939 - - 4e+0 At3g08710 ATH9 (thioredoxin H-type 9) C.G. S.X.
0.04 3e+0 30 Vitis vinifera 1608197_at CF512469 hypothetical protein LOC100263726 - 1e+0 At3g55515 RTFL7 (ROTUNDIFOLIA LIKE 7) C.G. S.X.
0.03 4e+0 30 Zea mays Zm.3208.1.S1_at CB816532 hypothetical protein LOC100278608 - 6e-3 At5g40080 60S ribosomal protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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