CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os09g0101100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os09g0101100 AK120565.1 - - 5e-1 At3g07425 unknown protein S.X. H.G.
0.83 95.8 Os01g0621300 NM_192847.1 - Conserved hypothetical protein 8e-2 At4g11740 SAY1 S.X. H.G.
0.50 68.0 Os08g0107800 AK070902.1 - - 1e+0 At3g12660 FLA14 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 14 PRECURSOR) S.X. H.G.
0.50 68.0 Os01g0764700 AK071863.1 - Holliday junction resolvase YqgF family protein 1e+1 At5g05410 DREB2A S.X. H.G.
0.47 62.3 Os12g0129000 9640.m00264 - Eukaryotic protein of unknown function DUF872family protein 3e-1 At5g65350 histone H3 S.X. H.G.
0.31 34.5 Os07g0563000 NM_185813.1 - Diacylglycerol kinase, catalytic region domaincontaining protein 1e-9 At4g21540 SPHK1 (SPHINGOSINE KINASE 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
179.4 100.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.6 97.5 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
7.2 97.4 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.2 97.4 GSM195224 Suspension cell GSE7951 Genome-wide gene expression profiling of rice stigma
5.6 96.9 GSM357136 14-day-old seedling, heat shock, rep 2 GSE14275 Expression data for heat shock in rice seedlings
4.6 96.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.6 96.3 GSM409422 Nipponbare_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
4.3 96.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.3 96.1 GSM409428 Nipponbare_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
4.1 96.0 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e-2 44 Os02g0668000 AK101871.1 - MscS Mechanosensitive ion channel family protein 1e-7 At2g17010 mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein C.G. S.X.
0.01 6e-2 42 Os02g0807100 AK119364.1 - - 7e-9 At5g65685 soluble glycogen synthase-related C.G. S.X.
0.01 6e-2 42 Os04g0419000 9632.m03282 - - 1e-2 At5g23680 sterile alpha motif (SAM) domain-containing protein C.G. S.X.
0.01 6e-2 42 Os07g0471200 AK111455.1 - Hypothetical protein 2e-4 At2g23310 ATRER1C1 C.G. S.X.
0.01 6e-2 42 Os07g0471300 AK069685.1 - Argonaute 4 protein 5e+0 At5g43810 ZLL (ZWILLE) C.G. S.X.
0.01 6e-2 42 Os08g0197000 AK109710.1 - Cyclin-like F-box domain containing protein 2e-1 At3g58190 LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29) C.G. S.X.
0.01 6e-2 42 Os09g0103700 AK071092.1 - Zn-finger, CCHC type domain containing protein 1e-2 At3g51880 HMGB1 (HIGH MOBILITY GROUP B 1) C.G. S.X.
0.01 6e-2 42 Os12g0211400 9640.m01026 - HhH-GPD family protein 7e-1 At4g17310 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 5e-1 38 Arabidopsis thaliana At3g07425 2745874 unknown protein F:unknown;P:unknown;C:unknown - - - C.G. S.X.
0.01 7e-1 38 Glycine max GmaAffx.53483.1.S1_at BU081386 - - 9e-5 At2g01340 unknown protein C.G. S.X.
0.11 3e-34 147 Hordeum vulgare Contig11670_at Contig11670 - - 4e-2 At4g35430 unknown protein C.G. S.X.
0.01 4e-2 42 Populus trichocarpa PtpAffx.214091.1.S1_at pmrna27435 hypothetical protein - 1e-3 At1g23720 proline-rich extensin-like family protein C.G. S.X.
0.07 1e-32 143 Triticum aestivum Ta.3032.1.A1_a_at BJ220981 - - 4e+0 At5g17070 unknown protein C.G. S.X.
0.01 9e-3 42 Vitis vinifera 1619204_at CF373337 - - 7e-5 At2g18328 ATRL4 (ARABIDOPSIS RAD-LIKE 4) C.G. S.X.
0.01 2e-1 38 Zea mays Zm.9841.1.A1_at BM340753 - - 6e-3 At2g01340 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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