CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0564000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.47 62.3 Os08g0564000 AK119787.1 - Phosphate transporter 6 1e-12 At5g43360 PHT3 (PHOSPHATE TRANSPORTER 3) S.X. H.G.
0.48 63.7 Os06g0714600 AU223447 - Ras GTPase family protein 1e-2 At3g46830 ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C) S.X. H.G.
0.32 36.3 Os10g0504200 AK111107.1 - Cytochrome b561 family protein 5e-1 At5g21940 unknown protein S.X. H.G.
0.28 31.1 Os01g0976300 AK111354.1 - Heavy metal transport/detoxification proteindomain containing protein 1e-1 At5g61412 unknown protein S.X. H.G.
0.27 27.5 Os02g0727300 AK120552.1 - U box domain containing protein 1e-1 At5g01010 - S.X. H.G.
0.25 24.1 Os01g0209400 AK103702.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e-17 At3g14450 CID9 (CTC-Interacting Domain 9) S.X. H.G.
0.20 16.5 Os04g0419500 9632.m03287 - Zn-finger, RING domain containing protein 2e+0 At5g01880 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.19 15.1 Os10g0414200 9638.m02352 - - 8e-1 At2g28570 unknown protein S.X. H.G.
0.17 12.6 Os08g0167000 9636.m00636 - ABC transporter related domain containing protein 2e-8 At1g31770 ABC transporter family protein S.X. H.G.
0.15 10.3 Os07g0563000 NM_185813.1 - Diacylglycerol kinase, catalytic region domaincontaining protein 1e-9 At4g21540 SPHK1 (SPHINGOSINE KINASE 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
112.6 100.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
49.6 99.9 GSM100443 Rice Bala 0ppm Arsenate (Control) Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
38.4 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
32.2 99.7 GSM100444 Rice Bala 0ppm Arsenate (Control) Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
7.5 97.5 GSM100440 Rice Azucena 0ppm Arsenate (Control) Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
7.2 97.4 GSM261999 IAC165, 2 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
6.7 97.3 GSM359910 IR29 root, salt-treated, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
6.5 97.2 GSM100441 Rice Azucena 1ppm Arsenate Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
6.2 97.1 GSM100442 Rice Azucena 1ppm Arsenate Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
5.8 97.0 GSM100439 Rice Azucena 0ppm Arsenate (Control) Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.53 9e-89 329 Os10g0444700 AK069054.1 - Phosphate transporter 6 9e-14 At5g43360 PHT3 (PHOSPHATE TRANSPORTER 3) C.G. S.X.
0.49 3e-73 278 Os03g0150500 AK106694.1 - Phosphate transporter 6 1e-6 At4g08878 inorganic phosphate transporter, putative C.G. S.X.
0.46 6e-139 496 Os03g0136400 AK121484.1 - Inorganic phosphate transporter 1 6e-9 At5g43340 PHT6 C.G. S.X.
0.45 6e-59 230 Os03g0150800 AY332471.1 - High affinity phosphate transporter 2 (Phosphatetransporter) 1e-12 At5g43340 PHT6 C.G. S.X.
0.41 2e-86 321 Os04g0186400 AF416722.1 - Phosphate transporter 6 5e-22 At2g32830 PHT5 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 1e-12 75 Arabidopsis thaliana At5g43360 834354 PHT3 (PHOSPHATE TRANSPORTER 3) phosphate transporter - - - C.G. S.X.
0.10 5e-6 54 Glycine max PsAffx.C2000277_at PsAffx.C2000277 - - 2e-1 At3g46910 ubiquitin protein ligase binding C.G. S.X.
0.39 3e-54 212 Hordeum vulgare Contig7944_at Contig7944 - - 1e-1 At5g43370 APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) C.G. S.X.
0.14 9e-14 79 Populus trichocarpa PtpAffx.141538.1.S1_s_at CA822385 high affinity inorganic phosphate transporter /// high affinity inorganic phosphate transporter /// high affinity inorganic phosphate transporter - 3e-23 At2g38940 ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2) C.G. S.X.
0.41 3e-53 210 Triticum aestivum Ta.10084.1.S1_at AF110180.1 high-affinity phosphate transporter PT1 - 3e-7 At5g43360 PHT3 (PHOSPHATE TRANSPORTER 3) C.G. S.X.
0.03 7e-2 38 Vitis vinifera 1607681_at CD802479 hypothetical protein LOC100257925 - 5e-28 At5g43370 APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) C.G. S.X.
0.60 0 803 Zea mays Zm.1921.1.S1_at AY108469.1 inorganic phosphate transporter 3 - 3e-16 At5g43340 PHT6 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
L GO:0006817 The directed movement of phosphate into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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