CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0563200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os08g0563200 AK110263.1 - Protein of unknown function DUF296 domaincontaining protein 2e-1 At1g76500 SOB3 (SUPPRESSOR OF PHYB-4#3) S.X. H.G.
0.60 79.7 Os01g0297200 AK109883.1 - AAA ATPase, central region domain containingprotein 6e-5 At4g25835 AAA-type ATPase family protein S.X. H.G.
0.50 68.0 Os11g0152700 AK102690.1 - Transcription factor HBP-1b(C38) (Fragment) 3e-1 At1g77920 bZIP family transcription factor S.X. H.G.
0.40 51.1 Os11g0700500 AK111626.1 - Myb, DNA-binding domain containing protein 1e-8 At5g59780 MYB59 (MYB DOMAIN PROTEIN 59) S.X. H.G.
0.33 38.8 Os12g0639200 AK122160.1 - AAA ATPase, central region domain containingprotein 4e-3 At4g05380 AAA-type ATPase family protein S.X. H.G.
0.33 38.8 Os05g0278500 AK067851.1 - Transferase family protein 2e-1 At1g06980 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.5 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.8 98.9 GSM262019 Nipponbare, 11 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
15.8 98.7 GSM262014 Nipponbare, 4 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
14.2 98.5 GSM262009 IAC165, 11 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
13.5 98.5 GSM262018 Nipponbare, 11 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
12.8 98.4 GSM431926 Root- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
12.5 98.3 GSM359908 IR29 root, control, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
11.7 98.2 GSM262015 Nipponbare, 4 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
11.2 98.2 GSM431931 Root- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
11.2 98.2 GSM262006 IAC165, 11 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.45 1e-87 325 Os07g0235200 AK120395.1 - Protein of unknown function DUF296 domaincontaining protein 2e+0 At1g04800 glycine-rich protein C.G. S.X.
0.33 6e-120 432 Os02g0820800 9630.m05730 - Protein of unknown function DUF296 domaincontaining protein 3e-2 At4g14465 DNA-binding protein-related C.G. S.X.
0.26 2e-18 95 Os02g0448000 9630.m02338 - Protein of unknown function DUF296 domaincontaining protein 8e-6 At4g22810 DNA-binding protein-related C.G. S.X.
0.21 3e-35 151 Os03g0270000 AK106069.1 - Protein of unknown function DUF296 domaincontaining protein 3e-3 At1g76500 SOB3 (SUPPRESSOR OF PHYB-4#3) C.G. S.X.
0.15 3e-23 111 Os02g0713700 9630.m04710 - Protein of unknown function DUF296 domaincontaining protein 3e+0 At5g03240 UBQ3 (POLYUBIQUITIN 3) C.G. S.X.
0.11 2e-11 71 Os08g0159700 AK109080.1 - Protein of unknown function DUF296 domaincontaining protein 6e-1 At2g41225 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 38 Arabidopsis thaliana At1g76500 843983 SOB3 (SUPPRESSOR OF PHYB-4#3) Encodes an AT hook domain containing protein. Identified in a screen of activation tagged lines that suppress the long-hypocotyl phenotype of a weak phyB allele. Affects cell elongation in the hypocotyl and leaves.Acts redundantly with ESC to modulate hypocotyl growth inhibition in response to light - - - C.G. S.X.
0.13 3e-16 87 Glycine max GmaAffx.91953.1.S1_s_at CF807678 - - 1e+0 At2g21870 unknown protein C.G. S.X.
0.06 2e-11 69 Hordeum vulgare Contig23110_at Contig23110 - - 1e+0 At4g38000 Dof-type zinc finger domain-containing protein C.G. S.X.
0.04 2e-1 38 Populus trichocarpa PtpAffx.201518.1.S1_at pmrna2994 hypothetical protein - 2e-1 At2g42940 DNA-binding family protein C.G. S.X.
0.10 1e-14 81 Triticum aestivum TaAffx.16883.1.S1_at CA660700 - - 4e+0 At1g01100 60S acidic ribosomal protein P1 (RPP1A) C.G. S.X.
0.04 3e-6 52 Vitis vinifera 1621103_at CB003423 - - 2e-12 At3g04570 DNA-binding protein-related C.G. S.X.
0.03 2e-2 40 Zea mays Zm.4669.1.S1_at AI737897 Growth-regulating factor 9-like - 5e-5 At3g52910 AtGRF4 (GROWTH-REGULATING FACTOR 4) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage