CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0562700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.7 Os08g0562700 AK066773.1 - Aminopeptidase N 4e-44 At1g63770 peptidase M1 family protein S.X. H.G.
0.91 98.9 Os10g0464400 AY332469.1 - Riboflavin kinase / FAD synthetase family protein 3e-22 At4g21470 ATFMN/FHY (riboflavin kinase/FMN hydrolase) S.X. H.G.
0.80 94.6 Os02g0773300 AK071811.1 - Pyridoxal phosphate-dependent deaminase familyprotein 3e-12 At1g48420 D-CDES (D-CYSTEINE DESULFHYDRASE) S.X. H.G.
0.67 87.2 Os12g0620400 AK072503.1 - Methyl-CpG binding domain containing protein 8e-1 At5g43175 basic helix-loop-helix (bHLH) family protein S.X. H.G.
0.50 68.0 Os05g0101200 AY262026.1 - Peroxisomal membrane anchor protein (Pex14p)domain containing protein 1e+0 At5g61660 glycine-rich protein S.X. H.G.
0.47 62.3 Os01g0104100 AK072797.1 - The start codon is not identified. 1e-2 At3g54360 protein binding / zinc ion binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.6 98.1 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
7.7 97.6 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
6.3 97.2 GSM159184 Y Leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
5.0 96.6 GSM207566 Mudanjiang8 wild type control rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
4.6 96.3 GSM207562 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
4.4 96.2 GSM207560 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
4.3 96.1 GSM207563 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
4.2 96.0 GSM207567 Mudanjiang8 wild type control rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
4.2 96.0 GSM207564 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
4.1 96.0 GSM207565 Mudanjiang8 wild type control rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 5e-2 42 Os01g0208600 AK104676.1 - Actin-binding WH2 domain containing protein 1e-2 At2g34150 WAVE1 C.G. S.X.
0.01 8e-1 38 Os03g0253800 AK120111.1 - Hypothetical protein 9e-8 At4g00026 - C.G. S.X.
0.01 3e+0 36 Os07g0551700 AK067424.1 - Cellulose synthase family protein 4e-1 At4g38190 ATCSLD4 C.G. S.X.
0.01 3e+0 36 Os10g0495200 AK102771.1 - Fertility restorer 3e-1 At4g35710 unknown protein C.G. S.X.
0.01 3e+0 36 Os12g0206200 9640.m00984 - - 5e+0 At5g53592 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 4e-44 180 Arabidopsis thaliana At1g63770 842681 peptidase M1 family protein F:metallopeptidase activity, zinc ion binding;P:response to cadmium ion, proteolysis;C:in 6 components;BOMFPA - - - C.G. S.X.
0.35 8e-62 240 Glycine max Gma.4388.1.S1_a_at AI960115 - - 2e-104 At1g63770 peptidase M1 family protein C.G. S.X.
0.54 0 1592 Hordeum vulgare Contig3646_at Contig3646 - - 4e-9 At1g63770 peptidase M1 family protein C.G. S.X.
0.30 1e-75 286 Populus trichocarpa PtpAffx.222875.1.S1_at pmrna40575 hypothetical protein - 2e-115 At1g63770 peptidase M1 family protein C.G. S.X.
0.52 0 1364 Triticum aestivum Ta.9192.2.S1_a_at CA680057 - - 2e-50 At1g63770 peptidase M1 family protein C.G. S.X.
0.10 1e-26 121 Vitis vinifera 1616969_at CF510605 - - 2e-67 At1g63770 peptidase M1 family protein C.G. S.X.
0.70 0 2024 Zea mays Zm.2312.1.A1_at CF633202 hypothetical protein LOC100280242 - 2e-33 At1g63770 peptidase M1 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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