CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0560900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os08g0560900 AK072473.1 - Photosystem I reaction center subunit II,chloroplast precursor (Photosystem I 20 kDa subunit)(PSI-D) 2e-6 At4g02770 PSAD-1 (photosystem I subunit D-1) S.X. H.G.
0.83 95.8 Os03g0778100 AK060493.1 - Photosystem I reaction center subunit III,chloroplast precursor (Light-harvesting complex I 17 kDaprotein) (PSI-F) 6e-7 At1g31330 PSAF (photosystem I subunit F) S.X. H.G.
0.80 94.6 Os08g0119800 AK060602.1 - - 3e-2 At2g33510 protein binding S.X. H.G.
0.77 93.1 Os07g0435300 AK120598.1 - Photosystem I reaction center subunit IV,chloroplast precursor (PSI- E) (Photosystem I 10.8 kDapolypeptide) 4e-9 At2g20260 PSAE-2 (photosystem I subunit E-2) S.X. H.G.
0.77 93.1 Os06g0320500 AF094776.1 - Chlorophyll a/b-binding protein 4e-9 At3g54890 LHCA1 S.X. H.G.
0.67 87.2 Os07g0141400 AF022732.1 - 23 kDa polypeptide of photosystem II 2e-13 At1g06680 PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.5 96.8 GSM267999 Green leaves in F9G RILs from parents lines GSE10872 Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
5.1 96.6 GSM174890 G mock 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
4.8 96.5 GSM174884 E mock 4 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
4.1 96.0 GSM431933 Shoot- +Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
4.0 95.9 GSM207563 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
3.9 95.8 GSM207567 Mudanjiang8 wild type control rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
3.8 95.7 GSM207566 Mudanjiang8 wild type control rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
3.8 95.7 GSM207560 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
3.8 95.7 GSM421723 MOCK, 96 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
3.7 95.6 GSM207565 Mudanjiang8 wild type control rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.71 0 3380 Os03g0192500 AK068957.1 - Protein phosphatase 2C-like domain containingprotein 2e-2 At4g33500 protein phosphatase 2C-related / PP2C-related C.G. S.X.
0.16 3e-46 188 Os10g0370000 CB683781 - Protein phosphatase 2C-like domain containingprotein 2e-1 At3g23200 unknown protein C.G. S.X.
0.05 1e-14 83 Os10g0317300 CB620207 - Conserved hypothetical protein 3e+0 At5g66190 FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1) C.G. S.X.
0.04 5e-5 52 Os06g0528000 NM_196265.1 - - 1e+0 At5g52570 BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-6 56 Arabidopsis thaliana At4g02770 828183 PSAD-1 (photosystem I subunit D-1) Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD1) - - - C.G. S.X.
0.14 3e-42 174 Glycine max Gma.10852.2.S1_at CD401184 - - 5e-35 At4g02770 PSAD-1 (photosystem I subunit D-1) C.G. S.X.
0.34 1e-116 420 Hordeum vulgare Contig13376_at Contig13376 - - 5e-5 At4g33500 protein phosphatase 2C-related / PP2C-related C.G. S.X.
0.14 7e-25 117 Populus trichocarpa PtpAffx.71066.5.A1_s_at CV237799 hypothetical protein - 1e-16 At4g02770 PSAD-1 (photosystem I subunit D-1) C.G. S.X.
0.19 5e-136 486 Triticum aestivum Ta.24304.2.S1_a_at CK212788 - - 3e-1 At1g03130 PSAD-2 (photosystem I subunit D-2) C.G. S.X.
0.13 2e-34 147 Vitis vinifera 1611733_s_at BQ797982 hypothetical protein LOC100240928 - 2e-12 At1g03130 PSAD-2 (photosystem I subunit D-2) C.G. S.X.
0.27 8e-56 218 Zea mays Zm.5527.1.A1_at BG840987 - - 3e-1 At3g49950 scarecrow transcription factor family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0015979 The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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