CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0560000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os08g0560000 AK107230.1 - 2OG-Fe(II) oxygenase domain containing protein 4e-6 At2g36690 oxidoreductase, 2OG-Fe(II) oxygenase family protein S.X. H.G.
0.83 95.8 Os08g0203100 9636.m00990 - Protein kinase domain containing protein 4e-4 At1g56145 leucine-rich repeat family protein / protein kinase family protein S.X. H.G.
0.71 89.6 Os09g0487900 AK120902.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 2e-11 At2g42280 basic helix-loop-helix (bHLH) family protein S.X. H.G.
0.67 87.2 Os07g0542400 AK111840.1 - Protein kinase domain containing protein 3e-4 At4g23260 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase S.X. H.G.
0.38 46.9 Os02g0603600 AK110833.1 - MYC1 6e-1 At2g43140 DNA binding / transcription factor S.X. H.G.
0.25 24.1 Os10g0541200 NM_197582.1 - Protein phosphatase 2C-like domain containingprotein 5e-11 At2g33700 protein phosphatase 2C, putative / PP2C, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
43.2 99.9 GSM154956 Leaf_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
42.5 99.9 GSM154954 Leaf_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
38.6 99.8 GSM154955 Leaf_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
29.8 99.7 GSM154948 Leaf_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
28.0 99.6 GSM154944 Root_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
26.9 99.6 GSM154942 Root_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
25.4 99.5 GSM154949 Leaf_tZ-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
24.0 99.4 GSM154950 Leaf_tZ-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
16.6 98.8 GSM154943 Root_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
9.9 98.0 GSM154938 Root_tZ-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 6e-19 97 Os09g0570800 AK064211.1 - Isopenicillin N synthase family protein 2e-7 At2g36690 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.03 3e-8 61 Os07g0169700 9635.m00688 - Gibberellin n b20-oxidase (Fragment) 4e-2 At3g12900 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.03 2e-6 56 Os03g0289800 AK069008.1 - Isopenicillin N synthase family protein 2e-5 At5g05600 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.02 5e-7 57 Os02g0630300 AK059045.1 - 2OG-Fe(II) oxygenase domain containing protein 4e-3 At1g06650 2-oxoglutarate-dependent dioxygenase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-6 54 Arabidopsis thaliana At2g36690 818241 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biosynthetic process;C:cellular_component unknown;POBFM - - - C.G. S.X.
0.02 6e-3 44 Glycine max GmaAffx.22027.1.S1_at BE801704 - - 8e-1 At4g30370 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.08 1e-7 57 Hordeum vulgare Contig19877_at Contig19877 - - 6e+0 At5g40370 glutaredoxin, putative C.G. S.X.
0.02 3e-1 38 Populus trichocarpa PtpAffx.3707.1.S1_s_at BP933241 hypothetical protein - 4e-2 At2g19590 ACO1 (ACC OXIDASE 1) C.G. S.X.
0.16 7e-39 163 Triticum aestivum TaAffx.7691.1.S1_at CA653049 - - 1e+1 At4g34265 unknown protein C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1618921_at CK138176.1 - - 5e-2 At2g04480 unknown protein C.G. S.X.
0.04 5e-4 46 Zea mays Zm.3184.1.A1_at AY105651.1 gibberellin 20-oxidase - 5e-2 At5g07200 YAP169 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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