CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0554400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os08g0554400 AK101181.1 - Zn-finger, C2H2 type domain containing protein 4e-25 At1g14580 zinc finger (C2H2 type) family protein S.X. H.G.
0.67 87.2 Os06g0702400 AK120529.1 - Hypothetical protein 5e-2 At3g42310 unknown protein S.X. H.G.
0.61 81.2 Os05g0147100 AK109133.1 - Conserved hypothetical protein 1e-2 At4g00180 YAB3 (YABBY3) S.X. H.G.
0.60 79.7 Os04g0443200 AK107991.1 - Protein of unknown function DUF538 family protein 1e+0 At3g04630 WDL1 S.X. H.G.
0.06 3.0 Os04g0278900 AK108886.1 - Dihydrouridine synthase, DuS family protein 2e-3 At3g63510 FAD binding / catalytic/ tRNA dihydrouridine synthase S.X. H.G.
0.03 1.4 Os05g0510300 AK120186.1 - Peptidase C19, ubiquitin carboxyl-terminalhydrolase 2 family protein 1e-3 At3g14400 UBP25 (UBIQUITIN-SPECIFIC PROTEASE 25) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
37.7 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.6 98.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
5.6 96.9 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
4.4 96.2 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
4.3 96.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.1 96.0 GSM304677 Unstable mutant line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
3.9 95.8 GSM195225 Shoot GSE7951 Genome-wide gene expression profiling of rice stigma
3.9 95.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.6 95.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.4 95.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 4e-177 623 Os09g0555700 AK061264.1 - Zn-finger, C2H2 type domain containing protein 2e-25 At1g14580 zinc finger (C2H2 type) family protein C.G. S.X.
0.26 6e-142 506 Os01g0242200 AK107468.1 - Zn-finger, C2H2 type domain containing protein 4e-9 At1g03840 MGP (Magpie) C.G. S.X.
0.21 3e-172 607 Os02g0672100 AK120603.1 - Zn-finger, C2H2 type domain containing protein 7e-24 At1g14580 zinc finger (C2H2 type) family protein C.G. S.X.
0.18 5e-165 583 Os04g0566400 CB669008 - Zn-finger, C2H2 type domain containing protein 9e-30 At1g14580 zinc finger (C2H2 type) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 4e-25 117 Arabidopsis thaliana At1g14580 838020 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MOPFB - - - C.G. S.X.
0.21 5e-16 87 Glycine max PsAffx.psHB034xB01f_at PsAffx.psHB034xB01f - - 3e-11 At1g14580 zinc finger (C2H2 type) family protein C.G. S.X.
0.08 2e-22 107 Hordeum vulgare Contig19625_at Contig19625 - - 1e-3 At2g02070 AtIDD5 (Arabidopsis thaliana Indeterminate(ID)-Domain 5) C.G. S.X.
0.10 1e-16 89 Populus trichocarpa PtpAffx.87589.1.S1_at AJ772522 hypothetical protein - 5e-40 At1g14580 zinc finger (C2H2 type) family protein C.G. S.X.
0.19 2e-79 297 Triticum aestivum Ta.27378.1.S1_s_at CA647282 - - 9e-13 At1g14580 zinc finger (C2H2 type) family protein C.G. S.X.
0.01 3e-1 36 Vitis vinifera 1616538_at CB347766 hypothetical protein LOC100263791 - 2e+0 At2g15327 unknown protein C.G. S.X.
0.20 1e-130 466 Zea mays Zm.13052.1.S1_at AY107104.1 indeterminate growth1 - 5e-6 At1g14580 zinc finger (C2H2 type) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0007018 Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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