CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os08g0549000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os08g0549000 AK060276.1 - Myb, DNA-binding domain containing protein 2e+0 At4g00200 DNA binding S.X. H.G.
0.38 46.9 Os01g0888900 AK120651.1 - Hypothetical protein 2e-2 At4g15120 VQ motif-containing protein S.X. H.G.
0.26 25.6 Os03g0856000 AK071626.1 - 2OG-Fe(II) oxygenase domain containing protein 8e-7 At1g06650 2-oxoglutarate-dependent dioxygenase, putative S.X. H.G.
0.13 8.2 Os02g0543000 AK066415.1 - - 1e-1 At5g66400 RAB18 (RESPONSIVE TO ABA 18) S.X. H.G.
0.12 7.2 Os04g0616300 CR290000 - Protein kinase domain containing protein 1e-3 At1g56120 kinase S.X. H.G.
0.10 5.7 Os04g0688100 U95217.1 - Anionic peroxidase precursor 1e-2 At5g40150 peroxidase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.2 98.8 GSM154833 Root_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
15.5 98.7 GSM154942 Root_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
15.4 98.7 GSM154944 Root_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
14.6 98.6 GSM154937 Root_tZ-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
13.0 98.4 GSM154938 Root_tZ-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
11.3 98.2 GSM154943 Root_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
8.5 97.7 GSM304677 Unstable mutant line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
8.0 97.6 GSM431930 Root- +Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
7.6 97.5 GSM304671 Unstable mutant line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
6.2 97.1 GSM431929 Root- +Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 2e-94 347 Os04g0609600 AK070129.1 - Protein phosphatase type 2C 3e-3 At5g27930 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.04 6e-2 40 Os01g0874300 AK060684.1 - MybHv5 (Fragment) 7e-31 At4g38620 MYB4 C.G. S.X.
0.02 2e-1 38 Os09g0538400 AK104408.1 - Transcription factor Myb1 3e-64 At4g38620 MYB4 C.G. S.X.
0.01 6e-2 40 Os04g0672700 AK102863.1 - Protein prenyltransferase domain containingprotein 2e+0 At5g64130 - C.G. S.X.
0.01 2e-1 38 Os10g0488400 AK108465.1 - The start codon is not identified. 9e-1 At4g18890 brassinosteroid signalling positive regulator-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At4g00200 828162 DNA binding F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMBO - - - C.G. S.X.
0.03 4e-2 40 Glycine max GmaAffx.28582.1.S1_at BQ252647 - - 8e-1 At2g47280 pectinesterase C.G. S.X.
0.10 1e-6 54 Hordeum vulgare HVSMEb0004M17r2_at HVSMEb0004M17r2 - - 1e+0 Atmg00450 - C.G. S.X.
0.02 7e-1 36 Populus trichocarpa PtpAffx.1286.7.S1_at CV238819 - - 1e+0 At4g14420 lesion inducing protein-related C.G. S.X.
0.03 1e-1 38 Triticum aestivum Ta.26049.1.S1_a_at CD454952 - - 1e-42 At4g38620 MYB4 C.G. S.X.
0.03 9e+0 30 Vitis vinifera 1622804_at CB035779 - - 2e+0 At5g57290 60S acidic ribosomal protein P3 (RPP3B) C.G. S.X.
0.08 1e-8 59 Zea mays Zm.9667.1.A1_at BM341541 transcription factor MYB42 - 1e+0 At3g48490 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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