Gene omics information

Query gene ID	Os08g0547800
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	81.2	Os08g0547800	AK106054.1	-	Esterase/lipase/thioesterase domain containingprotein	1e+1	At5g66770	scarecrow transcription factor family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.32	36.3	Os06g0537600	AK063014.1	-	Zn-finger, RING domain containing protein	9e-2	At5g11930	glutaredoxin family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.23	21.2	Os05g0435800	AK067138.1	-	Subtilisin-like protease	8e-2	At3g14067	subtilase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.19	15.1	Os08g0108300	AK063596.1	-	Pistil-specific extensin-like protein familyprotein	6e-1	At4g05430	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.17	12.6	Os08g0556400	AK106793.1	-	Zn-finger, DHHC type domain containing protein	2e-1	At3g24710	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.11	6.5	Os01g0195400	CF301352	-	Harpin-induced 1 domain containing protein	6e-2	At5g18540	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.11	6.5	Os02g0753400	9630.m05087	-	Conserved hypothetical protein	5e-1	At4g11300	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.10	5.7	Os05g0272800	AK068945.1	-	Conserved hypothetical protein	2e-4	At2g47010	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.08	4.2	Os06g0247900	AK065325.1	-	Endo-beta-1,4-glucanase precursor (EC 3.2.1.4)	1e-5	At1g64390	AtGH9C2 (Arabidopsis thaliana glycosyl hydrolase 9C2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.1	98.3	GSM359908	IR29 root, control, biological replicate 1	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
11.5	98.2	GSM359912	IR29 root, salt-treated, biological replicate 3	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
11.0	98.2	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9	98.1	GSM359910	IR29 root, salt-treated, biological replicate 1	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
10.0	98.0	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0	97.8	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
8.7	97.8	GSM195218	stigma 1, biological rep1	GSE7951	Genome-wide gene expression profiling of rice stigma
8.6	97.8	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4	97.7	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2	97.7	GSM359911	IR29 root, salt-treated, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	6e-15	83	Os09g0462200	AK064734.1	-	Esterase/lipase/thioesterase domain containingprotein	4e-2	At1g19190	hydrolase	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.07	4e-13	77	Os06g0306600	AK099262.1	-	Esterase/lipase/thioesterase domain containingprotein	3e+0	At2g37000	TCP family transcription factor, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.07	4e-13	77	Os07g0643400	AK109437.2	-	Esterase/lipase/thioesterase domain containingprotein	4e-2	At5g06570	hydrolase	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	9e-14	79	Os03g0790500	AK107136.1	-	Esterase/lipase/thioesterase domain containingprotein	3e+0	At5g04347	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.05	4e-13	77	Os07g0643500	AK111373.1	-	Conserved hypothetical protein	4e-2	At5g06570	hydrolase	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	2e-15	85	Os07g0643700	AK109637.1	-	Esterase/lipase/thioesterase domain containingprotein	3e+0	At4g21620	glycine-rich protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+1	32	Arabidopsis thaliana	At5g66770	836810	scarecrow transcription factor family protein	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMBFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-5	52	Glycine max	GmaAffx.71170.1.S1_at	AW423851	-	-	3e-2	At2g45600	hydrolase	C.G.	S.X.	Please select
0.08	1e-6	54	Hordeum vulgare	Contig11262_at	Contig11262	-	-	6e-4	At5g16080	AtCXE17 (Arabidopsis thaliana carboxyesterase 17)	C.G.	S.X.	Please select
0.02	4e+0	34	Populus trichocarpa	Ptp.1952.1.S1_at	CK087643	hypothetical protein	-	5e-1	At1g51090	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.39	9e-59	228	Triticum aestivum	Ta.26178.1.A1_at	CD453855	-	-	6e+0	At5g65274	-	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1612563_s_at	CF202478.1	hypothetical protein LOC100242819	-	3e-3	At3g50550	unknown protein	C.G.	S.X.	Please select
0.37	3e-50	198	Zea mays	Zm.17296.1.A1_at	CK347857	hypothetical protein LOC100273650	-	3e+1	At5g20740	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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